RNA id: AMCG00012683


Basic Information

Item Value
RNA id AMCG00012683
length 4439
RNA type mRNA
GC content 0.43
exon number 16
gene id AMCG00012683
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 4349107 ~ 4367364 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATAAGAAGACGATACATCGATTGAGGCAACCATTGGAATTCACACAcaattcagtttcatttaaCCCTCTATTGCacgacttttttttctttccaagataaactaaaattaaatgcctaaacaaatgcatttttaatgcgTGTTGTAATAAAAGTGTTGTTCAGTGTATGATTTATACCTTGCTGTCTTTCACACAACCTGCCACAGATAAACACCGGCGGCGCCAGGTAAACTCGATGACGCTGGTACACAGGTACACTGATTAAGGGGCTGTTGCTAAATTGTGTACTGTAGCTGAAGTGGCTAGGGATCATTTAagataaatcatatttactgaaatgtttctacataggtttgacataaaaataaaattaacaatggaaataatttaGGGGTACGTGCCCCCCCGTACCTCAATGGCTTGACGCCACTGGGTGTTAGGAACACTTAGTACCCAAAAATTGTATTACACCACCTGTTTCTCAGTCTTCAATTGCACTCCTAACTATCCTCACCACGTTACTGCAGGTCCATAGTGTCAAGTTGCTGCTTTTCCAGGGAGCGTTCCTCAACAACAACCTTTCCTTTAACCGGGAGAGTATAATCAAGCTAGAGGAGAAACAGACCTCCAAATCAGCGCGGGATTGTGTCTGGACGTGGCTGGGCTCAATCAAAAGTGAACAAGCATGCAGCTCCAGCGATGACGAAGATAGCAGCGACTCTGATGAGCAACCAGAAAATGAGACACTCCAATCACAACAGGTCACTGCAAGTATGGGAGGAAGTGCCGGCTTTCCCACAATGTAGACAACGAAGAAGATAATGATTCCTCAAATGCAAGGCCCAGGGATAAGCCATACCAATGGCAGATCAAGAGCAAGACACAGTGGTTCAACATAGAGAAGGACTGGATTATTGAAGCACAGTATCCGCTGCCTGATGTCAAAGGCATGAAGCTGTACAACACCAAATTTGGTCTGTCAGCATCTTTCTCTGGGATATCTCTTGGTGGGAAAGTTTGGCAGTTCAGTGATAGCAAAGGAAACTGGAATGACTTCACAAACAAGGTAAGACACATACTGTATGCAAATGCAAGGCCCATTAAGTGCATTGATGCATTCTCTTCATAATCCCCACCCTGATTGCAAGAAATGCATCATATGACTGAAGACTATTCTATATGTAGAGATGTGCAACATTTTTTCTATCAACCTCCACTCTCTTTGTCCTAGGGTTCTTCAAGCCATGATATTGAAAAGGAATACCAGCAGAACAAAAATGGAAGGATGACATTCAAGATCAAATCCACTACATATGAGTTAGATTTCTCAGGAATGACACAGAGGAACAAAGAAACTGGAAAACATCTATCTGTCAGTGGTGGACAATGGTGCATCTTCAGGGTGTGGCAGATGTGACAGCACTTCCTCTGGTGGCTCCGGCCACAATACTGCCTCCTCTGGCGATGGCAGTATCTCTTCCAGCCCTGCTATCGGTTCCTGTGACCACGGCGGCCTCAGCAGTGCCTCTTCCTGCAGTTGCAGCTCCTTGCTTGGCCATGGCAGCATGTCATCCAGCATGTGTGACGTTGACCACAGTAGCACCTCTTTTGAAAACTGCTCATGTTCTTCTAGGGTGTCCTCTGTATTTGGGAGCTTCATCTCCCAATCTAGAAGAGACAGCTGTTAGAAGTGACGACTCTATGTCCTCTTCCAGGGCAACATCTGGCAGGCATTGCTCTCCTTCCCACTCTAAGTCGGTCTTGGGAACACCTCAGCCCTCTTTGGCTTCGAGGCCAGGAACACCTTGGCCCTCACTGGCACACAACGGCTCCTCTCTCTTCGGcacaattaaactaaattatgtttaaattggTCTATTTCCTGGCTTCTTTTATTCCACACAATTTCCAGCAACCCCATATTCCCTGCGGCTATTAAAGATGGTTCAGCTACACGTCACTTGCTGTAAACCCAGTTAATATGCTATTTTATCAGggaatgtattattacaatgtgGGCTACTTCCTTATTGCAGTTCGGAAATTACTGTTTTAGTATCTTCAAGTTAGGTCTACTGTCACACGGTTGTTTTTGTGCACGTTTTGGTATTTTCTAAtctaattgtttattaattaatcgCGTGATTTCTTTACTTTCTAGTTTTGCATATTCACGTGTGGTGTAATTGAGTGTATGAAGTTACATTGCTAATTTCTAGCTTTGATTAAAACGATTTGTatcatacaaaatacagttaacATTAATTAGAAAAAGGATGTACACTTAATTATTTCACCTCAAAATATGAGTCCTCACACCTGCTTACACTTTCCACCTCACATACACTAACTTCGAAACGTAAAATGCCGAGGAAAGTATAAATAAAACTCCAGCCATAGCCACGCCTCTTCTCTGAGAATGACATTtgggaagagaaaagaaagtgaaaggGTCGGACTCGTCTCAGCTGTTTCAGCTCTGACGAAGCCACAGTTGATGCTGGACGAGCGGAACTGAAAAtgtttggTGCCGCTTTTAATGAGAGCCTGCAGTTTGAAGATTCAtatgatggtgatgatggaGATGTACAGAACCAGACCTCCTCAGCTGGGGGAAAGCACTATCAATGGATGCTTCAAGATACATGGCAGTGGTTGAACATCAGCCATGACGATGTGATTGAAACACACTACTGCCAACCAGGAGCAAAAGGGATCTCACTTTTCACTTCAGACTATGGccgggtttttctggattttgacACAATGAAGGTACAAGACACTCAGCTGGGTCTCTCCCGTCATGTCTCGTTGTCCGGGGGTGACACAGAGGAGTATTTGTGGTACTACCTGGATAACAGACGCTGGTATGAATATGGTGCTCAGGGGACTTCCAGTAGCAAATCATCGGTCACAAGCCCTGACGTGGAGCAGCAGTACACTCTCAACCCAAATGGTTCTTGCCCTTTCATTGTGGGGAATGCATCCTACTGCATTGATTTTACAGAGGTCACTTACCCATTGttgtgctgctgcagtgtgaCTGGCCCTTTACACACCTCTGTGGTGACGTCGCCCCCTGCTGGTGTTTGGAAGTGGGAGTTCCAAGGAGTGGATGGAGTATGGACTGAGTATGGATTGAAAAATATTCAAGGAGTGGCAGGCTCTGTGAACAGTGATGATATTGAGAGGAACTATCAGCTCAGCCCCCAGGGAAAGATGCAGTTCAAAGCAGGCAGATTTAGCTACACTCTGGACTTCCAGTGCTCAGTAAGCAGTGATGATATTGAGAGAATCTTCCAGCAGAACCCCCAGGGGCAGGTCCAGTTCACAGCGGGGAGGTTCAGCTACACTCTGGACTTCTCAGCCATGAGACAGAAGAACCTGCAAACCTCCAAAACTCGACCTGTCCGCCGGCTCCAGCAGTAGCCCCTGCTGTTTCAAGTCATGTCTTTGGAGAGATGCACAGAATTGCCCAAAGTGATCTACACTATTCCCCTGGTATTCTGCCAAACCAGTTGCATCGTGAGACACTTCGCTGTTTGTTCTCACTATAAACAACAGTGCCacaaatttatataaaaataaaataaaattgtgggCTATGTCTCTTAATATAACAGTTCTAGATAGTCCACCAGTACAGCAAGTACAGTGCAGTCACAAGGTTTCAAACACACCGTTTAGAAAGCTGGAAGTTTCTAATTGCCTTATAGAAACCAATGGCAAATCTCTCCAACACAATGATATTCCAATTTACACTCCGCCGGCAGCTGGAGCACTTGACACATGAGTCACTGCCTGGAGTGGCATTAGTCACAATGagaatgggaaaaaatatatataatcgtGATCTCAATGTAGAACGGAAACCCAGACTGCTCAATTTGATTTTTGGGAGAATGTAGTGGCGATAACTAAGATACAAGGAACTTGCGCTGCACTGTGCTTAGCTTCTGCTTGTTCAGATGCTTCATTATTGCCAAGGTTTTTTTTGACTACTATATAAGAATCTTACTGCTCTGTTTTCATTACATAACTTACTAAATGGCAGGGATAAAAAGtctaatttattatttaggGTTTTCCTTTTGGGCCAgaatttgaaatggttttaattcATAATCTCCAAGCCTTGATGGCACTGGAATGTAAAGGCCAGATTTTGACTTTCTGCTTCTGGTTTATTCATAAAgtcaattgttttaaaaatgttttttgaagcTGGCGATGTGCTGACcattacatgtttacatgtttacataaaacattaggCAAATCTGCATCTGAGACAGCTACCAGAACTAAGGtttacatattgaaaaaataattaataaatgaaggaaaacaagTTTAAAGTTGCCTACTTTTAATACTGCCAAATAACAGTTTATAATTTTGTTCTGCcaattttgagaaaataaatgtctcttCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48618 lncRNA downstream 19472 4327083 ~ 4329635 (-) True G39017
TU48498 lncRNA downstream 252366 4037439 ~ 4096741 (-) True G38910
TU48496 lncRNA downstream 372511 3974353 ~ 3976596 (-) True G38909
TU48414 lncRNA downstream 565057 3783804 ~ 3784050 (-) True G38842
TU48413 lncRNA downstream 565716 3783160 ~ 3783391 (-) True G38841
TU48782 lncRNA upstream 418330 4785694 ~ 4786528 (-) True G39160
TU48808 lncRNA upstream 546639 4914003 ~ 4916594 (-) True G39174
TU48809 lncRNA upstream 562424 4929788 ~ 4930753 (-) True G39175
TU48828 lncRNA upstream 563880 4931244 ~ 5006607 (-) True G39189
TU48827 lncRNA upstream 638771 5006135 ~ 5006607 (-) False G39189
AMCG00012682 mRNA downstream 40387 4303995 ~ 4308720 (-) True AMCG00012682
AMCG00012678 mRNA downstream 324704 4015172 ~ 4024403 (-) True AMCG00012678
AMCG00012677 mRNA downstream 359017 3980790 ~ 3990090 (-) True AMCG00012677
AMCG00012676 mRNA downstream 485683 3862048 ~ 3863424 (-) True AMCG00012676
AMCG00012673 mRNA downstream 576120 3757095 ~ 3772987 (-) True AMCG00012673
AMCG00012684 mRNA upstream 12509 4379873 ~ 4381284 (-) True AMCG00012684
AMCG00012688 mRNA upstream 140263 4507627 ~ 4508220 (-) True AMCG00012688
AMCG00012690 mRNA upstream 256551 4623915 ~ 4642672 (-) True AMCG00012690
AMCG00012691 mRNA upstream 317552 4684916 ~ 4696006 (-) True AMCG00012691
AMCG00012689 mRNA upstream 393321 4760685 ~ 4772958 (-) True AMCG00012689
TU47984 other downstream 2164944 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 2571886 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 3809516 523747 ~ 539591 (-) True AMCG00012628
TU49217 other upstream 2088357 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 4745077 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 7873032 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 8747529 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 13512861 17880225 ~ 17899426 (-) False AMCG00013038

Expression Profile