RNA id: AMCG00012684


Basic Information

Item Value
RNA id AMCG00012684
length 405
RNA type mRNA
GC content 0.45
exon number 3
gene id AMCG00012684
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 4379873 ~ 4381284 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGAAGGGGAATTGCAAAAAGGGCAAGAGGTGTCATTTGCAACACATCTACTCCCATGGCTCCCCATCATCCTCTGATGAAGATGAGAGGGGCAGGCGGAGGCGCTCTTCGTCCACAGACCAAGACAGCCCTGATGGCAAACCATATAGGTGGCAGATAAATGCtggagatggatggatggatattgaCAATGACTTTATTATAGAGGCTCAGTACTCACAGCCTGCTGCTAAAGGGATCAAACTGTACAACACAATATATGGAGCAATCTCTATAGATTTTAATCAAATGAAGGTCTTAAAGAAAAGAATAAGAGTACGACGCAAGAGTTCGGACACAGCTGACCAAGAAAATGAGTGGCTGTGGTATTACTGTGGAAAACATCGCTGGACCCTGTTTGGAGAG

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway
ko05164 Influenza A
ko05162 Measles

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48618 lncRNA downstream 50238 4327083 ~ 4329635 (-) True G39017
TU48498 lncRNA downstream 283132 4037439 ~ 4096741 (-) True G38910
TU48496 lncRNA downstream 403277 3974353 ~ 3976596 (-) True G38909
TU48414 lncRNA downstream 595823 3783804 ~ 3784050 (-) True G38842
TU48413 lncRNA downstream 596482 3783160 ~ 3783391 (-) True G38841
TU48782 lncRNA upstream 404410 4785694 ~ 4786528 (-) True G39160
TU48808 lncRNA upstream 532719 4914003 ~ 4916594 (-) True G39174
TU48809 lncRNA upstream 548504 4929788 ~ 4930753 (-) True G39175
TU48828 lncRNA upstream 549960 4931244 ~ 5006607 (-) True G39189
TU48827 lncRNA upstream 624851 5006135 ~ 5006607 (-) False G39189
AMCG00012683 mRNA downstream 12509 4349107 ~ 4367364 (-) True AMCG00012683
AMCG00012682 mRNA downstream 71153 4303995 ~ 4308720 (-) True AMCG00012682
AMCG00012678 mRNA downstream 355470 4015172 ~ 4024403 (-) True AMCG00012678
AMCG00012677 mRNA downstream 389783 3980790 ~ 3990090 (-) True AMCG00012677
AMCG00012676 mRNA downstream 516449 3862048 ~ 3863424 (-) True AMCG00012676
AMCG00012688 mRNA upstream 126343 4507627 ~ 4508220 (-) True AMCG00012688
AMCG00012690 mRNA upstream 242631 4623915 ~ 4642672 (-) True AMCG00012690
AMCG00012691 mRNA upstream 303632 4684916 ~ 4696006 (-) True AMCG00012691
AMCG00012689 mRNA upstream 379401 4760685 ~ 4772958 (-) True AMCG00012689
AMCG00012693 mRNA upstream 406250 4787534 ~ 4827776 (-) True AMCG00012693
TU47984 other downstream 2195710 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 2602652 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 3840282 523747 ~ 539591 (-) True AMCG00012628
TU49217 other upstream 2074437 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 4731157 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 7859112 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 8733609 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 13498941 17880225 ~ 17899426 (-) False AMCG00013038

Expression Profile