RNA id: AMCG00012688


Basic Information

Item Value
RNA id AMCG00012688
length 594
RNA type mRNA
GC content 0.60
exon number 1
gene id AMCG00012688
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 4507627 ~ 4508220 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATATCACTGCCAAGATGGAAATAAGCACCAGCCAGCAGCAGTTCATGCCGCCTGCCTGTTTCTTTGCGGCTGCCGCCCAGAATATCCAGCTCAGCCCCACTGACAGCCAGTGCAGCAGTAAATCAGGCAAGCAGGTCAAAAGACAGCGTTCGTCCTCGCCCGAGCTGCTAAGGTGCAAAAGGAGGCTGAACTTCGCTGGCTTTGGGTACAGCCTGCCCCAGCAGCAGCCCGCGGCGGTGGCCCGGCGCAACGAGAGGGAGAGGAACAGGGTGAAGCTGGTCAACATGGGCTTCGCCACGCTGCGGGAGCACGTCCCCAACGGCGCCGCAAACAAGAAGATGAGCAAGGTGGAGACCCTGCGCTCGGCGGTGGAGTACATCCGGGCgctgcagcagctcctggaCGAACATGACGCCGTGACCGCTGCCTTCCAGTCGGGGGTCCTCTCTCCGACCATCTCCCAGAACTATTCCAACGACATGAACTCCATGGCGGGCTCACCTGTCTCCTCGTACTCTTCAGACGAGGGATCTTACGACCCCTTGAGTCCTGAGGAGCAAGAACTCTTGGACTTCACCAATTGGTTCTGA

Function

GO:

id name namespace
GO:0010629 negative regulation of gene expression biological_process
GO:0021575 hindbrain morphogenesis biological_process
GO:0061195 taste bud formation biological_process
GO:0002070 epithelial cell maturation biological_process
GO:0043697 cell dedifferentiation biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0061549 sympathetic ganglion development biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0021984 adenohypophysis development biological_process
GO:0045666 positive regulation of neuron differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0000989 obsolete transcription factor activity, transcription factor binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09067 ASCL; achaete-scute complex protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48618 lncRNA downstream 177992 4327083 ~ 4329635 (-) True G39017
TU48498 lncRNA downstream 410886 4037439 ~ 4096741 (-) True G38910
TU48496 lncRNA downstream 531031 3974353 ~ 3976596 (-) True G38909
TU48414 lncRNA downstream 723577 3783804 ~ 3784050 (-) True G38842
TU48413 lncRNA downstream 724236 3783160 ~ 3783391 (-) True G38841
TU48782 lncRNA upstream 277474 4785694 ~ 4786528 (-) True G39160
TU48808 lncRNA upstream 405783 4914003 ~ 4916594 (-) True G39174
TU48809 lncRNA upstream 421568 4929788 ~ 4930753 (-) True G39175
TU48828 lncRNA upstream 423024 4931244 ~ 5006607 (-) True G39189
TU48827 lncRNA upstream 497915 5006135 ~ 5006607 (-) False G39189
AMCG00012684 mRNA downstream 126343 4379873 ~ 4381284 (-) True AMCG00012684
AMCG00012683 mRNA downstream 140263 4349107 ~ 4367364 (-) True AMCG00012683
AMCG00012682 mRNA downstream 198907 4303995 ~ 4308720 (-) True AMCG00012682
AMCG00012678 mRNA downstream 483224 4015172 ~ 4024403 (-) True AMCG00012678
AMCG00012677 mRNA downstream 517537 3980790 ~ 3990090 (-) True AMCG00012677
AMCG00012690 mRNA upstream 115695 4623915 ~ 4642672 (-) True AMCG00012690
AMCG00012691 mRNA upstream 176696 4684916 ~ 4696006 (-) True AMCG00012691
AMCG00012689 mRNA upstream 252465 4760685 ~ 4772958 (-) True AMCG00012689
AMCG00012693 mRNA upstream 279314 4787534 ~ 4827776 (-) True AMCG00012693
AMCG00012692 mRNA upstream 332007 4840227 ~ 4846796 (-) True AMCG00012692
TU47984 other downstream 2323464 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 2730406 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 3968036 523747 ~ 539591 (-) True AMCG00012628
TU49217 other upstream 1947501 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 4604221 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 7732176 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 8606673 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 13372005 17880225 ~ 17899426 (-) False AMCG00013038

Expression Profile