RNA id: AMCG00012690


Basic Information

Item Value
RNA id AMCG00012690
length 2333
RNA type mRNA
GC content 0.45
exon number 11
gene id AMCG00012690
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 4623915 ~ 4642672 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aacagctGTCCCTGGGAGACTGTTGTAGGACCTGTAAGACTTGCAAGCCAATAAAaAATGACGCCAACCCTTGAACAAAGTCTGAAGGCTTTGGTCTCAGTGTTCAGGAGAGAGAGCCACAAGGCGCTGGGCTCCGAGAGGACTTCTATCTGCAGTGCTGACCAGATGCTCATGGCTCTGCAGCTCGCAATGGCTGAAACGAAAAGAGAGGAGAATGGAGAATTTAGTGCCTCCCTGAGTGACATCCTGGTGACTTGGAAATATTTACTAAAGGATAAACTGAACTTGCATCATGAAGGTGCACAGGCCTCTGAGAACTATGACCTTGTACGAAAACACTACGACTCCTTCCTGAAACGCAGTAATATGGTTGACTTGACTGACATCCATGGACTGTACAACCAGTTAAAAATGGAAAGTGAACCAGTGGCACCAGTCACAGCTATGCAGCTCTTCGAGTTTCTGTCTGAAAACTCAGAGTGCAGCGGTGAAAAGGATGCAAGCAAGTTTGTTCCAGCGTGTCCATCAACACCATCCAACAGGCCGAGCCAATCACATTCACAGTTGCTGAAAGCGGTGAAGAGGCTACTCTGTGCATATTTAAACTTGCTGGTGAACTCCAAGAATGATCTGGCCTTGGCCCACGTGCTCAACATTCCTGACCGAGGACTGGGGAGAGTTGCATTCACTGATCTCAAGCACGCCGCGCGCAACAAGCAAACATCCCTTTTCTTGGCAGCTACATCCTTTGTTCGCGCAATACAACTTGGTGGGAAGGGTTATGCTCCATCAGAAACGGATCCACTGAGGAAGCATATCAAAGGCCTTTCTGACTTTGTACATTTCACTGATAATTTGGAGGAACTGCTTGGAGAAATTCCTGACCCAAgCCTGGCAGGGGGGCGGATGATGACGCTGATTAAGATGGCCTTACTGAAAGGGCGCAGCAGTGGGGACCCCGTGTGCCGGGCAGCGGAGGAGGCCTTACAAGAGCTGAAACAGAGGATTAGCTGTATCAACGACACTCGCAAACAAGCCACCAACCCAGCCGGCACAGGCATCAGTCCAGCACGGcCGAAAGCCCACACCATCAACCACGAGACGGCGTACGGAGGCAGAGAGATGGTGAAAGTGCTGCTCACCTTGTTGGATGAAGAAGCGCTTTGTCCTCCAACCAGAAACAAAGCAAAGGTATTGTCTGCAGTAGAAGAAGGACTGGAGTTGTCTGCAGGAGCTTGCATCGTCACACTTTTCAGGTCCCCTGAGCAATCAAATGGTTCATCTCCAAAACCACTCAGAGCCCGGATTCAGGAACGtgaaaaccaaaaaccaaaGGTCAAAGGAAGAGCCATCAGATCTCAGTTCGCCATCACGTACAAAGATGAGGATGCCATTTTAAACAGAGTTCTTCAGTTTCCCAGCCTCAGTCAGGTGCCAACATGGGTGCACCCAGCCCCTAAACCCGGGCACCATCCATACAGCTCCTGTGATGACCAGTCTGCCGCAGGGACAGATCTCTCTTCAATAGATGGAGGTAATGCCAGTGAAGACTTCATAAAGAGAGCTGCCTTTGGCTCTACTTCTGGAAATGCTCAGCAGAAGGGAAACCCGAGGAATAAGGGCAAAGGGTGTGCTAATGGTCAGCCAGGAAGCAGAGGCTGCAAGAGGAAACCGGAGGACATCAACCACGAAAACATAGTTTGTAGTCAAGAAAACCAGCCACCTCACAAAAGAACTCCGACGCGACCCCCAACTTCGGACAAGTCCCACGGCACACAGGACAGCAAGGCCAGAGCACCCGGGAAAAAGAGCAAAGCTGCCGCCAAGACCAAGTTGATTGCAGGGCAGGGAAAGCTCACAAACTTTTTCAgattgtaattatgtatttatcaatttatgTTTTCAGATTGAAATTTACCGACATTAAGCATTTCagttctgcttttattttttatttttttatttttttaataattttgtgatcacaatcaatatttttttgtgtttgagaTTTGATCATTACCTTTTAATTCtgaaccacttttttttttttttttttctcaagtaGATCTTGATCACTGTCTGGATAAAATTCTTAAAGGATTTGCTTTATATGTTTAGGCATACACGTTTTATATACCTTCTTTAAgaattgtgtattttcaaaatattttaggtGACCTCCattgaaatgcatgttcatGTTGGGTACAtacaacatgcattttattttctgtaaatatatgctgtttttatgccatattttcagttttcatttagaCAAACCCAAAACGTGGATTTtcaaatagttttaataaacatttttgtacata

Function

GO:

id name namespace
GO:0010629 negative regulation of gene expression biological_process
GO:0006401 RNA catabolic process biological_process
GO:0006402 mRNA catabolic process biological_process
GO:0000956 nuclear-transcribed mRNA catabolic process biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48565 lncRNA downstream 106283 4127007 ~ 4517632 (-) True G38965
TU48618 lncRNA downstream 294280 4327083 ~ 4329635 (-) True G39017
TU48498 lncRNA downstream 527174 4037439 ~ 4096741 (-) True G38910
TU48496 lncRNA downstream 647319 3974353 ~ 3976596 (-) True G38909
TU48414 lncRNA downstream 839865 3783804 ~ 3784050 (-) True G38842
TU48782 lncRNA upstream 143022 4785694 ~ 4786528 (-) True G39160
TU48808 lncRNA upstream 271331 4914003 ~ 4916594 (-) True G39174
TU48809 lncRNA upstream 287116 4929788 ~ 4930753 (-) True G39175
TU48828 lncRNA upstream 288572 4931244 ~ 5006607 (-) True G39189
TU48827 lncRNA upstream 363463 5006135 ~ 5006607 (-) False G39189
AMCG00012688 mRNA downstream 115695 4507627 ~ 4508220 (-) True AMCG00012688
AMCG00012684 mRNA downstream 242631 4379873 ~ 4381284 (-) True AMCG00012684
AMCG00012683 mRNA downstream 256551 4349107 ~ 4367364 (-) True AMCG00012683
AMCG00012682 mRNA downstream 315195 4303995 ~ 4308720 (-) True AMCG00012682
AMCG00012678 mRNA downstream 599512 4015172 ~ 4024403 (-) True AMCG00012678
AMCG00012691 mRNA upstream 42244 4684916 ~ 4696006 (-) True AMCG00012691
AMCG00012689 mRNA upstream 118013 4760685 ~ 4772958 (-) True AMCG00012689
AMCG00012693 mRNA upstream 144862 4787534 ~ 4827776 (-) True AMCG00012693
AMCG00012692 mRNA upstream 197555 4840227 ~ 4846796 (-) True AMCG00012692
AMCG00012694 mRNA upstream 222197 4864869 ~ 4890898 (-) True AMCG00012694
TU47984 other downstream 2439752 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 2846694 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 4084324 523747 ~ 539591 (-) True AMCG00012628
TU49217 other upstream 1813049 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 4469769 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 7597724 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 8472221 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 13237553 17880225 ~ 17899426 (-) False AMCG00013038

Expression Profile