RNA id: AMCG00012691


Basic Information

Item Value
RNA id AMCG00012691
length 1181
RNA type mRNA
GC content 0.41
exon number 5
gene id AMCG00012691
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 4684916 ~ 4696006 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGAGACAAAGCTTCAGGGGACGAGTTCAAACGCGCGGGTTCCCACTACCCACGTGACCGCCGAGCAGTACATTTTCGTTGCAGCGAGTCGGAGTAACAGTTTCCATTTGCCATTGGTGCAAAGACATGGCCAGAGTTCAAACTTACTTCAGGCAGCTCCTGAACCTCACTTTCCTCGACATCCCAGTGCTGTGACCGCCTGTCTGATctgccacacactgcacacaaaatGTTCTGGTTAATGGAAGGGATGTGTTTTTTGCCGACTTTCTTGGTGATTTGGTCTTCTTGCTCCTTCATCGTTTCCTACATCATCTCTTTGTTCGAACATCACGTCCCTCCAGTATTTCCGTATATCAGtgacacagggacacacacccCTGAAAGTGGCATTTTCAGCATAATGATTGTTATCTCAGCATTTTTGGGTGTGGCCACCATGTACACAAGGTACAAGTTTGTGGAGAAGTTAAATGAAGCAACTCATACAGTTAACCCAAGACTGAATCACATTACATTCTATGTGGGGCTAATTGGGTGCATGGGGATGTGTGTTGTGGCTTCTTTCCAGTCTATTGTCTCCTACATGTCAGTCCCACACGGCTCCTCTCTGCCCTTGTGCCGTGTCCGTATGGTGATCTCCATAATCTCCGTCGTTGCTGTATTCCCAAATTACACCAACAGGACATACTCAAGCAATGAGGGATCCAACCCTTCAGACACCATCTTGTTCTTTATTGCCATGACAGGAACACCCTGAAGagacaagtaaaaaaaaaaagtacgaTTAAACAGGAAGTTACATGTGGTTGTGACAATACTTTTTAAGCCATCTCCTAAGTCTTTAATTAGCTTGGCAAGACAGAATGCAAAATATGTAACTGGTGAAACTGAAATACATGTCTAGTAGTCTACATAATGATATCTGCAGTCATATATTAAGGGGAAACAGTACTTTCTGAATTCTGCATATAAATGTAGCACTGTTACAGGGAATGTTAACAATTTGTACAGAATACTCCCATAAACAAGTGATGTATATTTTCTACTACAATATCAAGTTTtgtccaaactgaaatgaagaCATTCACTTCTGTAGGTAGTCAAACAGAATTTTcacatagtaataataaaaattgcatatttgaagaaaaaaaagctttttatttttagaaaagaaC

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome
ko04672 Intestinal immune network for IgA production

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48565 lncRNA downstream 167284 4127007 ~ 4517632 (-) True G38965
TU48618 lncRNA downstream 355281 4327083 ~ 4329635 (-) True G39017
TU48498 lncRNA downstream 588175 4037439 ~ 4096741 (-) True G38910
TU48496 lncRNA downstream 708320 3974353 ~ 3976596 (-) True G38909
TU48414 lncRNA downstream 900866 3783804 ~ 3784050 (-) True G38842
TU48782 lncRNA upstream 89688 4785694 ~ 4786528 (-) True G39160
TU48808 lncRNA upstream 217997 4914003 ~ 4916594 (-) True G39174
TU48809 lncRNA upstream 233782 4929788 ~ 4930753 (-) True G39175
TU48828 lncRNA upstream 235238 4931244 ~ 5006607 (-) True G39189
TU48827 lncRNA upstream 310129 5006135 ~ 5006607 (-) False G39189
AMCG00012690 mRNA downstream 42244 4623915 ~ 4642672 (-) True AMCG00012690
AMCG00012688 mRNA downstream 176696 4507627 ~ 4508220 (-) True AMCG00012688
AMCG00012684 mRNA downstream 303632 4379873 ~ 4381284 (-) True AMCG00012684
AMCG00012683 mRNA downstream 317552 4349107 ~ 4367364 (-) True AMCG00012683
AMCG00012682 mRNA downstream 376196 4303995 ~ 4308720 (-) True AMCG00012682
AMCG00012689 mRNA upstream 64679 4760685 ~ 4772958 (-) True AMCG00012689
AMCG00012693 mRNA upstream 91528 4787534 ~ 4827776 (-) True AMCG00012693
AMCG00012692 mRNA upstream 144221 4840227 ~ 4846796 (-) True AMCG00012692
AMCG00012694 mRNA upstream 168863 4864869 ~ 4890898 (-) True AMCG00012694
AMCG00012705 mRNA upstream 238503 4934509 ~ 4979371 (-) True AMCG00012705
TU47984 other downstream 2500753 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 2907695 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 4145325 523747 ~ 539591 (-) True AMCG00012628
TU49217 other upstream 1759715 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 4416435 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 7544390 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 8418887 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 13184219 17880225 ~ 17899426 (-) False AMCG00013038

Expression Profile