RNA id: AMCG00012705


Basic Information

Item Value
RNA id AMCG00012705
length 3040
RNA type mRNA
GC content 0.43
exon number 23
gene id AMCG00012705
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 4934509 ~ 4979371 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcCTCCATAACAAACAGCGATATAATTTTTCTGAAGTTGCACGCCCCCTGGGAAGTCCTTTGCAGATACGCAGAGCTAATGAACATACGAATGCCTTTCAGGAGAAAAATCTATTTCCTTCACCGACGGTACAAGTTCATGAGCAGgatggagaaacgattaagcaGGTTTCGAGGATGGTTGCCCCGAAAGCCAATGAAGTTTGACAAGGACACACTACCCGATCTGGAGGAGAATGACAGCTATACCGCCCCCTTCAGTCAGCAGAGGATACACCACTTTATTATCCAcaataaagacacatttttcaACAACGCAACAAGGAGCCGGATCGTGCATCACATTTTGCAAAGGGTCAAATATGAAgaaggcaaaaataaaattggacTTAACCGTCTTCTGAGCAATAGTTCATATGAAGCAGCTTTTCCCCTTCATGAGGGGAGTTACAGGAGTAAGAATTCCATAAGGACGCATGGAGCAGAGAACCACAGACACCTGCTTTATGAGTGCTGGGCCTGGTGGGGAGTGTGGTACAAATATCAGCCTCTGGATCTTGTACGGCGATATTTTGGTGAGAAGATTGGTCTGTACTTTGCATGGCTGGGCTGGTACACGGGGATGTTGTTCCCTGCTGCGCTGGTGGGGCTACTGGTGTTTCTGTATGGAGTCTTCACTTTGGAGAACTGCCAAGTCAGTAAAGAAGTCTGCCAAGCAGCAGATATCATAATGTGTCCCTTGTGTGACAAGTACTGTCCTTACATGAGACTGTCCGACAGCTGCGTCTACGCTAAGGTCACTCATCTGTTTGACAATGGAGCAACAGTGTTCTTTGCTGTTTTCATGGCAGTATGGGCGACAGTCTTCCTAGAGTTCTGGAAGCGGAGACGGGCCGTGATCGCCTACGACTGGGACCTGATTgactgggaggaggaggagGAAGAAATCCGCCCTCAGTTTGAAGCCAAATATTCAAAGAAGGAGAGAATGAATCCAATATCTGGGAAACCAGAGCCTTATCAAGCTTTCACAGACAAATGCAGCAGACTGATCGTGTCAGCATCGGGGATATTCTTCATGATCCTAGTGGTGATCGCAGCTGTGTTTGGAATCGTTATCTACCGTGTGGTGACTGTGAGCACTTTCGCGGCCTTTGACTGGGCTTTAATCAGGAATAACTCTCAGGTTGCAACTACAGGGACCGCAGTGTGCATAAACTTCTGCATTATCATGCTGCTGAATGTGTTATATGAAAAAGTTGCCCTTCTTCTTACAAATTTAGAGCAGCCACGTACAGAGTCTGAATGGGAGAACAGctttactttgaaaatgtttctgtttcagtttgtCAATCTGAACAGCTCAACATTTTATATTGCCTTCTTCTTAGGAAGATTCACGGGGCGTCCAGGTGCCTACATGAGGCTCATAAATAGATGGAAACTAGAAGAGTGTCACCCTAGTGGATGCCTTATAGACCTTTGCATGCAGATGGGTATCATCATGGTGCTCAAGCAGACATGGAATAACTTCATGGAGCTTGGTTACCCGCTGATCCAGAACTGGTGGACACGACGGAGGTTGAGACAAGAGCACGGCCACAAAATTAAGGCTAGATTCCCTCAGTGGGAAAAGGACTACAATCTCCAGCCTATGAATGCCTATGGACTGTTTGATGAATACTTGGAGATGATTCTACAGTTTGGCTTCACAACCATATTTGTGGCAGCATTTCCTTTGGCACCAGTGTTAGCCTTATTGAACAACATCATCGAGATCCGCCTAGACGCTTATAAATTTGTTACACAGTGGAGACGGCCTTTAGCCTCAAGAGCCAAAGATATAGgaATCTGGTATGGGATTCTGGAAGGGATAGGAATTCTCTCTGTCATTACAAATGCTTTTGTCATAGCGGTGACCTCCGACTTTATCCCCCGACTGGTCTACGCATATAAATACGGACCATGTGCAGGACAAGGACAAGCCGGAGAAAGGTGTATGGTGGGATATGTAAATGCCAGCTTGTCAATATTCCAAGTGTCAGATTTTGAAAACCGATCCGAACCTGGATCTGATGGAGCAGATATATTTGGTTCACCGATAAAGTACTGCAGATACAGAGATTATAGAGCTTCTCCAAATTCCAAAGAACCCTATGCCTACACTCTGCAGTTCTGGCATGTATTGGCAGCGCGGCTTGCATTCATCATTGTGTTTGAGCACATGGTTTTTACTATCAAAAACCTAATTTCTTACCTGATCCCAGACCTGCCTAAAGACCTGAGGGATCGCATGCGTCGGGAAAAGTACCTGATTCAGGAAATGATGTATGAAGCAGAGCTCGAACGCCTGCAGAAAGAGAGGAACGAGAgaaaaaagaatggcaaatcTCACCACAATGAGTCAAAACCCATGTCCTCGGTTTACGTATTCCTGCTCTGAAGCCCAGTTGCTTCTGGAAAATGAGAAAAGGAACCTCAATGCATGTCAGGAGATGTTTTACAAGGCAGGCTAATCAGCACATTTACTAAGAGGTGTACTGTGAACAATACTGCAATCAACCAATACATGTTAACCGTTTCTAACACTACAAGCATGTTCCAGtcaatgcagcaatgtacaccAATTTGTACTTCGGAGAGACGTTGTATTATCTACCATTTTACAACAGTTTGCTACTTTTCTCAGACGTCGCATCTTCTTCCATTACAGTTTTACATATCTTCAGAGACTGAATGTAAATAGACAAATTGGAAACTTTTGCATAAGTTAATGGTCTGTGCAGTATCATACCATACTCTCTTCCATTGTATCAAAAGGAACTCCTGTTTACAATCTACCTTTTTTTATTTCGAGACCTTTAAAAAAGATTTATGATATGACATATATTGCTTAATTGTACATAGCCAAATATTTAAGAGAATGTagaattttcattaaaattaaggATCAGTTCATGAACATGAAGCCACGTTTACTGCTTGTATATTGTGAtgcaataaatacttaaaaataaatgcatctgaaCTGTACCACTGGG

Function

GO: NA

KEGG:

id description
K19499 ANO4, TMEM16D; anoctamin-4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48809 lncRNA downstream 3756 4929788 ~ 4930753 (-) True G39175
TU48808 lncRNA downstream 17915 4914003 ~ 4916594 (-) True G39174
TU48782 lncRNA downstream 147981 4785694 ~ 4786528 (-) True G39160
TU48565 lncRNA downstream 416877 4127007 ~ 4517632 (-) True G38965
TU48618 lncRNA downstream 604874 4327083 ~ 4329635 (-) True G39017
TU48827 lncRNA upstream 26764 5006135 ~ 5006607 (-) False G39189
TU48887 lncRNA upstream 227233 5206604 ~ 5209859 (-) True G39231
TU48922 lncRNA upstream 241400 5220771 ~ 5282686 (-) True G39245
TU48923 lncRNA upstream 254791 5234162 ~ 5250471 (-) True G39246
TU48968 lncRNA upstream 408822 5388193 ~ 5408760 (-) True G39281
AMCG00012694 mRNA downstream 43611 4864869 ~ 4890898 (-) True AMCG00012694
AMCG00012692 mRNA downstream 87713 4840227 ~ 4846796 (-) True AMCG00012692
AMCG00012693 mRNA downstream 106733 4787534 ~ 4827776 (-) True AMCG00012693
AMCG00012689 mRNA downstream 161551 4760685 ~ 4772958 (-) True AMCG00012689
AMCG00012691 mRNA downstream 238503 4684916 ~ 4696006 (-) True AMCG00012691
AMCG00012704 mRNA upstream 17193 4996564 ~ 5005697 (-) True AMCG00012704
AMCG00012709 mRNA upstream 93514 5072885 ~ 5094228 (-) True AMCG00012709
AMCG00012708 mRNA upstream 117950 5097321 ~ 5122506 (-) True AMCG00012708
AMCG00012707 mRNA upstream 173904 5153275 ~ 5171222 (-) True AMCG00012707
AMCG00012710 mRNA upstream 211582 5190953 ~ 5203165 (-) True AMCG00012710
TU47984 other downstream 2750346 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 3157288 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 4394918 523747 ~ 539591 (-) True AMCG00012628
TU49217 other upstream 1476350 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 4133070 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 7261025 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 8135522 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 12900854 17880225 ~ 17899426 (-) False AMCG00013038

Expression Profile