RNA id: AMCG00012708


Basic Information

Item Value
RNA id AMCG00012708
length 2573
RNA type mRNA
GC content 0.41
exon number 9
gene id AMCG00012708
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 5097321 ~ 5122506 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATACATTTGCGTACACTTTTACAATGCTACACAGTGGAAAATGTATGTACTGCGTGGTGTCAAGCTTTTCTTGACTGGGTGAGTTTCAGAAAGGATCTATACCAGGGGCAGTGGTACCTGAGATAGGATACACTTTTTGGAGGTCCGACTGTCATGGAAATGGTGCAAGAGAAGTCTGCAGGAGatttgctGGCAGAACAGGGCAGCCCACTGCTCCCAGATCCAGAGGTGCTGCCCTATGCCAACTATCCCAGCATGCAGTTTTCTCCGGTACAGCCGCCCATGGCCTCTCCACCATACTACTCCAACCAGAATTACTACCCGCAGTACAGCGAGGAGTGGTACTTCCCCTCTGGAATGTATGAAATGAGGAAAGTGCCCTGTGAGAACTCTTATGACACAGAGCTGGAGGAAGGCACCATGCCACTGTGTAAAAGGTCAAGGCAAGGACCTCATTCAGGGAGGATCAAAGGCGAGgagctgtgtgttgtgtgtggagaCAAGGCTTCTGGGTACCATTACAATGCCCTAACCTGTGAAGGATGCAAAGGTTTCTTCAGGAGAAGTATAACAAAGAACGCCGTGTACAAGTGTAAGAATGGAGGGAACTGTGAAATGGATATGTACATGAGGAGGAAGTGCCAGGAATGTCGACTCCAGAAGTGCAAAGAAATGGGAATGCTGGCAGAGTGCTTACTAACAGAAATACAATGCAAGTCGAAGAGGCtgagaaaaaacaccaaacccTCTCCTGACCATTCCAGCCGAGACACAGAGGGAGCCGATAGTGGAGATGCTAAACAGGTCACTTCCACAACAAAGGTGTCAAAGGAGAAGGTTGAGTTCAGTCAAGAGCAAGTCAACcttctgaattacattttagatgCCTATAATAAATATCGCATTCCTCAAGACATTGCCAAAAAACTACTTCAAGATCAATTCACTGCAGAGGAAAACTTCCTTTTACTCACGGATTTGGCGACTAGCCACGTGCAAGTACTGGTGGAGTTTACAAAAAAGCTCCCAGGGTTTCAAGGTCTGGATCACGAGGACCAGATTGCTTTGCTGAAAGGATCCGCAGTTGAAGCAATGTTTCTCCGATCGGCACAGATTTTCACACGAAAGCTGCCCCCGGGACACACAGAAGTTCTTGAGGACAGGATTCGAAACAGTGGTATATCAGATGAATATATCACCCCAATGTTTAACTTTTATAAAAGCATCGGAGAGCTTCAAATGACACAGGAAGAACATGCGCTTCTGACAGCCGTGACAATTATGTCACCAGACCGACCATATGTGAAAGATGTGCAGGCTGTGGAGACGCTACAGGAGCCAATGTTAGAAGTTTTGCGCAAGTTTTGCAAGCTGCACCATGCCAAAGACCCCCAGCACTTTGCTCGTTTGCTGGGACGCCTCACGGAGCTGAGGACTTTAAACCATCACCACGCCGAGATGCTGCTGTCCTGGAGGATGAGCAACCACAAATTCACCCCCTTGCTCTGTGAAATCTGGGATGTGCAGTGATTATAGCTGGCAATAATTGGGTGTGCCGAATATTCAATGCCATGCTACAAggacaagcaaacaaaaccaagaacatcatttgaaatgtgtatttttaaaagaataaccATATTCCGTGTTGCCCGTATTCTGTATTACAAAAGTGTACATGTAACAGCCATGTGACTTAACACATGAAATACTGTATTTAGATGTTGTACATATAATATATCTTTTGAAGTGTATTTTATCTGCCAGATTACTCACATTAgatgattatttatataatgttatattctTGAAAAATTTGAAAGTGATTAGTGCcttttatatttcaatgttaAGGTGCAGACAAAGTGATATTATGGATAAGAAAACCCAGAGTTgtgtatacaaataaacatttttgttttagatattcatattggttttcatttgtttggttCTTTGCTTTATGTCTTCGACCATCTGATTGTCTTTCTGTAGAGATTTAttcatcttttatttcagtctttGATTACCACTGTATCTTTTAAAGAAATCTTATGCATGTATGAAGAtaggaatataaaaaaaatgtcagaactTAATTGCATCCTCCGGACAACATTGTGCTTTCTTGTAGCTTGAATAACTctcaaaagttttaaatgttttgagaacaAATAGATTCAAGGAGATACTGGTATTTAACaatgattataatataaaaGGCAGCTGGTAtctgtaattcagtaatatgaccATCTGTgagttaaaataattgtattgctgtACATTCTTGGTTTTGTCATGAATTGTGTACTGTCAAATGCctcacatgcaaaaaaaaaaaaaaaaaacgatttaaaGGAACAATATACAGGCAAATTGTTCCCAATTAAGGAGCTGTGGGTAACTTTTGAAGGGGAAATTCATTCTATGGCTTTCGGTCAGAACCACAGAATTCACAGGCTACATAAAATACTTGAAGGCTAATGAAACAATATGTTCTTACAGATGTTCATTTTGATGGTAGATATTTGTTGTCtagatctaaaaataaaaaggatgtTGTTTTCTAA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0032052 bile acid binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08537 NR1H4, FXR; farnesoid X receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48828 lncRNA downstream 90714 4931244 ~ 5006607 (-) True G39189
TU48827 lncRNA downstream 90714 5006135 ~ 5006607 (-) False G39189
TU48809 lncRNA downstream 166568 4929788 ~ 4930753 (-) True G39175
TU48808 lncRNA downstream 180727 4914003 ~ 4916594 (-) True G39174
TU48782 lncRNA downstream 310793 4785694 ~ 4786528 (-) True G39160
TU48887 lncRNA upstream 84098 5206604 ~ 5209859 (-) True G39231
TU48922 lncRNA upstream 98265 5220771 ~ 5282686 (-) True G39245
TU48923 lncRNA upstream 111656 5234162 ~ 5250471 (-) True G39246
TU48968 lncRNA upstream 265687 5388193 ~ 5408760 (-) True G39281
TU48984 lncRNA upstream 423328 5545834 ~ 5546069 (-) True G39295
AMCG00012709 mRNA downstream 3093 5072885 ~ 5094228 (-) True AMCG00012709
AMCG00012704 mRNA downstream 91624 4996564 ~ 5005697 (-) True AMCG00012704
AMCG00012705 mRNA downstream 117950 4934509 ~ 4979371 (-) True AMCG00012705
AMCG00012694 mRNA downstream 206423 4864869 ~ 4890898 (-) True AMCG00012694
AMCG00012692 mRNA downstream 250525 4840227 ~ 4846796 (-) True AMCG00012692
AMCG00012707 mRNA upstream 30769 5153275 ~ 5171222 (-) True AMCG00012707
AMCG00012710 mRNA upstream 68447 5190953 ~ 5203165 (-) True AMCG00012710
AMCG00012711 mRNA upstream 165522 5288028 ~ 5303893 (-) True AMCG00012711
AMCG00012712 mRNA upstream 289700 5412206 ~ 5414340 (-) True AMCG00012712
AMCG00012713 mRNA upstream 302195 5424701 ~ 5436981 (-) True AMCG00012713
TU47984 other downstream 2913158 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 3320100 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 4557730 523747 ~ 539591 (-) True AMCG00012628
TU49217 other upstream 1333215 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 3989935 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 7117890 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 7992387 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 12757719 17880225 ~ 17899426 (-) False AMCG00013038

Expression Profile