RNA id: AMCG00012709


Basic Information

Item Value
RNA id AMCG00012709
length 1980
RNA type mRNA
GC content 0.52
exon number 9
gene id AMCG00012709
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 5072885 ~ 5094228 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGTTTCGAACAGGGCTCCCACTGGAGTTCCATGGCGCTGGGAATTAACCGAGCAGGGAATGGAGGGCAACTGACATTTtagggaaaaacaaagcaacgCTTTTACACACTAAACAGTCTGCCGTCACACGTGAAAAGGCATTTTGGAGAGAAAGGTCTAAATGCAGGCGTGGTTTGGGGAGAAGTTTGACCTTCCCGTCCTGAGTCCGCGCAGTCCTCTGACCCCGAGACATGGCCCAGGCTTGGCAGATGTTTTCCAGTATGACCAGTGGCTCTCAGTACGACATGAAGCCACCTTGGTGCCCATGCAGGAAGACTTGGCAATCTGGCTTACTGGCATGTTGGGAGAAGAAGTGAAGGCCGAACGTTTCATGGAGGAATTGGATAATGGAGTCCGACTGTGTCAGCTGATTGGAGTCCTGCAGAATAAGGTGTCTGAATGTTGTCATTCGGATAAGTGGAAGCTCTTTCCCATGAAGAAAGTGCCATGCAAGAAAGACGCCTCTCCAGGCTCCTTCTTTGCTCGTGACAACACTGCGAACTTCCTGTGCTGGTGTAGGTGTGTGGGAGTGGACGAGACGTACCTCTTTGAATCTGAGGGCTTGGTCTTACACAAAGAGCCACGTCAGGTGTGTCTGTGCCTGTTGGAAATTGGACGGATTGTATCCAAATATGGTGTGGATCCCCCAGTCCTAGTTAagctggagaaggagattgaACTGGAAGAGACTCTGCTCATCACCAGAGGACCTACTGTTCCAGTGAAAACCTTCAGTGTGTGCTGTCAACATGGAGACCTTCATGAGGCAGTTCAGCATATCGCACAGGACCCGCCCTGCAACTGCTCACATAGGTTTTCGATAGAGTATTTGTCTGAGGGAAGATACAGACTAGGAGATAAAATCCTTTTTATTAGGATGTTGCATGGAAAGCATGTGATGGTGCGCGTTGGCGGCGGCTGGGACACGCTTCAGGGTTTCTTGCTGAAGTACGACCCCTGCCGAGTGCTACAGTTCAGCATGCTTGAGCAGAAGATCCTGGCCTTTCAGAAGGGAGTGTCTAACCCTCTGCTCAATATCCCAGCTTCACCTGGCCGGTCTCCTCACCCTCCTGCCATGAACCCTTTCTCGGCGGTGCATTTGCCCTCCGCCCCCTCCAAACCCAAGTCTCCTTCCCCAGTCCCCAAGCTCACGACAAACCGAGCTCCCACGTCAGCAATGGCTGCTCAGTCTACTACCAGCACTACTCGACTGGTAAAAAAGCACCAGATTCCCGCCAAGACGTCTCCGTTGACCTCCATGTTAGCTGCAGGCCAACTCCAAAAAGCAAAAAGCTCTCGACCTTCCCCCAAGACCCCCTTAACACTGACTAAAAGTCTAGAGAACAAATCTAGACGCCCTCAGTCGCCCCTGACGAATTCTCCAGTGGTGTCCCGGCTAAATCCCTCCTTGCGTTGTGCCCCCCCCTTGGCAAGGAGCCCGTCCGTTTTCTCCGAGCCGTCTTCCAAGTCTTCTAAACTCACTCCCTCGCTGACCAGATGCTGTCCGACACCTTCCTCGTTATCGGTTTGTTCGGAGCCGATTGGTTCATTTGCATCCATTCAGAGAGTGATTACTAAAAAGGCAGCAGAGCAGCCCCGGAAatctcctgctcctgctgcaaCGCTGGTGTGTCCTCAGAAAAAACGCCTTTCCCAGAGGCGCCCTGGTTCTCCTGCAGCAAGCCTTCGGCTCAACACTCAAGGAGTCAAAACGCTGGAACAGAATGCCCCTTCACTTAGAGTCCGAACCCCAGTCAAACCGGACAATTgcaaaaaataccaaaactTCAAAAAGCGCTCCTGCGTCTTCCACAAGCACAATGAGGTGTCCCTTGTCTGTTGTCAAGATTTCCCAAACAGCCAAAACTCCCGAAATTTCAGCCTGCAGAGCACAGCCAGCAAGCCAGATGCAGGCTCCTGTGAAGGCTTCGCAGAAATC

Function

GO:

id name namespace
GO:0007050 cell cycle arrest biological_process

KEGG:

id description
K24627 GAS2, GAS2L; growth arrest-specific protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48828 lncRNA downstream 66278 4931244 ~ 5006607 (-) True G39189
TU48827 lncRNA downstream 66278 5006135 ~ 5006607 (-) False G39189
TU48809 lncRNA downstream 142132 4929788 ~ 4930753 (-) True G39175
TU48808 lncRNA downstream 156291 4914003 ~ 4916594 (-) True G39174
TU48782 lncRNA downstream 286357 4785694 ~ 4786528 (-) True G39160
TU48887 lncRNA upstream 112376 5206604 ~ 5209859 (-) True G39231
TU48922 lncRNA upstream 126543 5220771 ~ 5282686 (-) True G39245
TU48923 lncRNA upstream 139934 5234162 ~ 5250471 (-) True G39246
TU48968 lncRNA upstream 293965 5388193 ~ 5408760 (-) True G39281
TU48984 lncRNA upstream 451606 5545834 ~ 5546069 (-) True G39295
AMCG00012704 mRNA downstream 67188 4996564 ~ 5005697 (-) True AMCG00012704
AMCG00012705 mRNA downstream 93514 4934509 ~ 4979371 (-) True AMCG00012705
AMCG00012694 mRNA downstream 181987 4864869 ~ 4890898 (-) True AMCG00012694
AMCG00012692 mRNA downstream 226089 4840227 ~ 4846796 (-) True AMCG00012692
AMCG00012693 mRNA downstream 245109 4787534 ~ 4827776 (-) True AMCG00012693
AMCG00012708 mRNA upstream 3093 5097321 ~ 5122506 (-) True AMCG00012708
AMCG00012707 mRNA upstream 59047 5153275 ~ 5171222 (-) True AMCG00012707
AMCG00012710 mRNA upstream 96725 5190953 ~ 5203165 (-) True AMCG00012710
AMCG00012711 mRNA upstream 193800 5288028 ~ 5303893 (-) True AMCG00012711
AMCG00012712 mRNA upstream 317978 5412206 ~ 5414340 (-) True AMCG00012712
TU47984 other downstream 2888722 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 3295664 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 4533294 523747 ~ 539591 (-) True AMCG00012628
TU49217 other upstream 1361493 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 4018213 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 7146168 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 8020665 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 12785997 17880225 ~ 17899426 (-) False AMCG00013038

Expression Profile