RNA id: AMCG00012711


Basic Information

Item Value
RNA id AMCG00012711
length 2743
RNA type mRNA
GC content 0.49
exon number 13
gene id AMCG00012711
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 5288028 ~ 5303893 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCGCCTCTACCTGCTGTAGCTTTAATTGAAGCAACTTCCTCGTTTGTAAATGAGACCTCTGTCAGACCTGTTCAAGCCACACCCGTATCCGTTCAATTCATGAGCAGAAAGGAGTTCAGGACAATATTTGCTACTCTGCTTGGATCCTTTGTCAGAGTCAGGGCTTTTGTTGAGCTGAACAGTCCGTCAGCTATTTGGGGTGTTTGCACTTTTGCTGTACTTTTTTTAGGAAGCGCGGGACTTTTGGAGgtggattgtattatttttcaacatcGACAGGATGATCGATATCGGCTCCCAAACTTTCATCAAGTCGGTTTTGCAGACCAATGCAGTTCAGGCGGAAGACTCCAGTTTAGCATTACCGCTCgaggaaaacataattttgtctACGAACCCTATTAGTGGCAAAACCTCCCGAGTGCAACAGCAAGTGCAGCTGACATTGTCCAGGAAAAGCAAGAAGGGCTTGTCCAATGGCAGTCTTCACTTGCCAGGCATCTCTGAAACcctttacaaatctgaatatggAAAGGACGCTCTGAACATGCTAGAAAAGGTACATTTAACAGAGGGCTATGAAACCAATTATGAGAGCTTAAGCAAATCTGCATCTGCGGGCTATAGACTGACGGACACAATGAGCCGGCCGGCGATGAGGCTGGAAGTCTCCCCGTTTGTCATCCCGGAGATGCAGCGTTCTCAGTTCGGCTTCCGTTCAAGCTACCACGATGGGATGTTCCATGGCGGTGGCGCATACACAATGCCCGTTGCCCAGGCTTTCACAAAGAGTGCGTCCCAGCGTGACAAGGAAAGATCTCGGAGTCTTTCTTGCAGATACGCGCATTCAGAAATCGTAAACAGCAGGAAGTTCGCCATGGCCAGGGCCCCGACCTTCCAAAGGAGCCAGCGTCAAGTGGTAACTAAACAACGTTTTTCCTCGGACGATGGTGTTTTTTTACCCAGCAGCCCCATTAGTCCTGACAGCAGTATGCCCGTCTTCGTGGACGCAGGCCGGGCAGGGGTCAGCATGCGTCAGCAAGCGCGATTTGGAAACTCGTTCCAGACGAATAGGAGCTCTGAGGGGGGCTTGTGGAAATATGGTCTTGTCAGGAGAGAAAGTGGCTTCAAGCAGAATGCAAACCGTGCCTCCTACCCTGCCTCATTGATAAGTATGGAAATTGATGGAAGGAGGGCCTCAGAAGCCAGAGGTTTTTCCACCATGGACCAGCAGAAGTCTGTCAGGGAGTTAAAAAGAAgCAAGTCTGAGGGGCAGGCCATCGAGCTAACGCTGGACAAAGCCGTGGGCTTTCTGTCTCAGGAGAATACTGACTTTCAAGTCTCGGCGGCAAACTTTATCCAGCATCAGTGCTACCTCAGTAGCGAAGCGAAGAGAACGGTGTTTTTCATGCATGGCATCCCCAAGCTAATCAACCTCCTTAAGAGTGACAGCGTGGAGCTTCAGAGGGCAGCCAGTGGAGCCCTTCGCAATATTGTCTTCGAGAACAATGACAACAAGATGGATGTGAAGGAGCAGAATGGGATTCCAGTTGTGCTCAAGGTACTCAAAACCACCAGAGATATGGAAACAAAGAAGCAGCTCACAGGTTTGTTATGGAACTTGTCTTCCCATGACCTCCTGAAAGATCAACTGTCCAGAGAGGCCCTCCAGATTGTCACCGACACCATTATTGTCCCCTGCTCTGGCTTATCAGATGGAGACTACCCAAAAGATGACCTGCTGGCTGATCCAGAAATCTTCTACAATGCCACTGGCTGTTTGAGAAATCTCAGCTCCGCAGGTCCGGAAGGTCGGAAGGCCATGAGGGACTGTGATTCCTTTATCGACTCCCTGGTTCATTACGTGCGGGGCTCCGTGGCCGACCGCAAACCAGATGACAAGTCTGCAGAGAACTGCGTCTGTGTCCTTCACAACCTATCCTACCAGTTGGAAGCTGAACACCCTCATAAATTCAGCAGGGAAATTCGTGAATCGAGGCAAAACCTGGCAATACAAAGAGAAGCACTCGGTTGCTTTGGTTCCAGAAGTACTAAGATTACAGTAACCAAAGAGAGCAGTCTCCCATTCCCAGAAGAGAAGAGCAACCCTCGTGGCGTGGAGTGGCTCTGGAGCCCCATCACCGTCAGGATGTACCTTTCTCTCATCGCCATGAGTAACAGGAAATTCAGTCAGGAGGCATCTCTAGGGGCCCTTCAGAACCTCACTTCAGGAAAAGGAATGGTTTCTGGACATCAGTTCAGTGCACCCCCAAgtGCGCAGCTCTTGCCTGATTTGTTGCTGCTCTTGCCCAACTCGGGCACAAGTACAGATGTTACTGCAGACATGACTGTGTCGGTGTGTTACGTTCTCAACAACCTGGTCCAGAAAGATTCGCAGAATGCTCGAGCCATCCTGAGCAGCGGGGggctgaataaaatattcaacATCAGCACCAAAGAAACCACCTATGGACCCACTAAAGCTGCCATAGCAGCCAGCAATGTACTTCATTCGATGTGGAgacacacagagctgcacagtCTGTACAAAAAGgCTGGATACAAAAAGACTGATTTCATCAACAATGGGATAATAAAAGCAGTCAAATCTACAAGAGACTAGAGTCAACCTGGAAAGAAAGCGAATGTTCAGCAAATTCGGATTGGGTTGAGATTTTGCTATGTCAGAGTCTTGGCAGTGTGGAATATGGTGTGTTATTGAGCAGTAAGGaagaattggg

Function

GO: NA

KEGG:

id description
K12642 PKP2; plakophilin 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48922 lncRNA downstream 5342 5220771 ~ 5282686 (-) True G39245
TU48923 lncRNA downstream 37557 5234162 ~ 5250471 (-) True G39246
TU48887 lncRNA downstream 78169 5206604 ~ 5209859 (-) True G39231
TU48828 lncRNA downstream 281421 4931244 ~ 5006607 (-) True G39189
TU48827 lncRNA downstream 281421 5006135 ~ 5006607 (-) False G39189
TU48968 lncRNA upstream 84300 5388193 ~ 5408760 (-) True G39281
TU48984 lncRNA upstream 241941 5545834 ~ 5546069 (-) True G39295
TU49068 lncRNA upstream 474397 5778290 ~ 5812036 (-) True G39371
TU49079 lncRNA upstream 512579 5816472 ~ 5895114 (-) True G39377
TU49078 lncRNA upstream 514293 5818186 ~ 5895114 (-) False G39377
AMCG00012710 mRNA downstream 84863 5190953 ~ 5203165 (-) True AMCG00012710
AMCG00012707 mRNA downstream 116806 5153275 ~ 5171222 (-) True AMCG00012707
AMCG00012708 mRNA downstream 165522 5097321 ~ 5122506 (-) True AMCG00012708
AMCG00012709 mRNA downstream 193800 5072885 ~ 5094228 (-) True AMCG00012709
AMCG00012704 mRNA downstream 282331 4996564 ~ 5005697 (-) True AMCG00012704
AMCG00012712 mRNA upstream 108313 5412206 ~ 5414340 (-) True AMCG00012712
AMCG00012713 mRNA upstream 120808 5424701 ~ 5436981 (-) True AMCG00012713
AMCG00012714 mRNA upstream 330572 5634465 ~ 5639532 (-) True AMCG00012714
AMCG00012716 mRNA upstream 488145 5792038 ~ 5805393 (-) True AMCG00012716
AMCG00012715 mRNA upstream 526725 5830618 ~ 5831514 (-) True AMCG00012715
TU47984 other downstream 3103865 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 3510807 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 4748437 523747 ~ 539591 (-) True AMCG00012628
TU49217 other upstream 1151828 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 3808548 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 6936503 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 7811000 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 12576332 17880225 ~ 17899426 (-) False AMCG00013038

Expression Profile