RNA id: AMCG00012713


Basic Information

Item Value
RNA id AMCG00012713
length 891
RNA type mRNA
GC content 0.49
exon number 3
gene id AMCG00012713
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 5424701 ~ 5436981 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTAGCGCAACGGAGGACGGTATCAGCCTGTGTAAAAAGGCTCTACAGATTGTCACAGAGCTCTGCCTTGGAGGACAGGTGGATCGGGAAAAATGCTCCGATATTTTCCCCTTGGAGAGAACCATACCAGGTAAAGGCACCACAGATATCTCGGTCAGTCTCCTTGCTGTAGTCGTCAGTTTCTGTGGGCTTGCCCTTTTGGtagtctctctctttgtcttttGGAAGCTCTGTTGGCCGTGCTGGAGGAACAAAGCTCTCACCTCTCATGCCAATAACGTCCCTCAGACTATCCCCAGCGCCCCTCCAGAGGTGGTGGAAACCGAGGAAAAAAAGGAGATCAAAGAAAATGGGAAGAGCTCAATGCATGTGTCCAGTGTGGATTTTAGCATGGGCAGTTTGCAAAGAAGATCAACCTCTACCAGCATTGGGCGAATAAAGCCAGAACTTTACAAACAAAAGTCCGTGGATTCGGAGGACGACAATAAGGAGAACGTTCAGACTTGCGGAAAACTGAACTTTGCTCTGCAGTACGACTATGAGAACGAGATGCTCATTGTTAAAATCGTCAAAGCGTTGGAACTGCCAGCCAAGGATTTCACGGGCACGTCGGACCCTTATGTCAAGATGTACCTGCTTCCGGACCGGAAAAAGAAATTTCAGACTCGGGTTCACCGAAAAACCCTCAATCCCATCTTTGACGAGACCTTCCAGTTTCCCGTTGCGTACGATCAGTTGTGTAACCGGAAGCTGCACTTCAGTGTGTACGACTTTGACCGGTTCACCAGTCACGACATGATTGGGGAAGTCATAGTGGACAATCTCTTCGAGGTGTCGGATCTCTCCAGGGAAGCAATAGTGTGGAAGGACATTAACTGTGCCACCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48968 lncRNA downstream 15941 5388193 ~ 5408760 (-) True G39281
TU48922 lncRNA downstream 142015 5220771 ~ 5282686 (-) True G39245
TU48923 lncRNA downstream 174230 5234162 ~ 5250471 (-) True G39246
TU48887 lncRNA downstream 214842 5206604 ~ 5209859 (-) True G39231
TU48827 lncRNA downstream 418094 5006135 ~ 5006607 (-) False G39189
TU48984 lncRNA upstream 108853 5545834 ~ 5546069 (-) True G39295
TU49068 lncRNA upstream 341309 5778290 ~ 5812036 (-) True G39371
TU49079 lncRNA upstream 379491 5816472 ~ 5895114 (-) True G39377
TU49078 lncRNA upstream 381205 5818186 ~ 5895114 (-) False G39377
TU49135 lncRNA upstream 624009 6060990 ~ 6063817 (-) True AMCG00012732
AMCG00012712 mRNA downstream 10361 5412206 ~ 5414340 (-) True AMCG00012712
AMCG00012711 mRNA downstream 120808 5288028 ~ 5303893 (-) True AMCG00012711
AMCG00012710 mRNA downstream 221536 5190953 ~ 5203165 (-) True AMCG00012710
AMCG00012707 mRNA downstream 253479 5153275 ~ 5171222 (-) True AMCG00012707
AMCG00012708 mRNA downstream 302195 5097321 ~ 5122506 (-) True AMCG00012708
AMCG00012714 mRNA upstream 197484 5634465 ~ 5639532 (-) True AMCG00012714
AMCG00012716 mRNA upstream 355057 5792038 ~ 5805393 (-) True AMCG00012716
AMCG00012715 mRNA upstream 393637 5830618 ~ 5831514 (-) True AMCG00012715
AMCG00012730 mRNA upstream 553122 5990103 ~ 5997112 (-) True AMCG00012730
AMCG00012732 mRNA upstream 615383 6052364 ~ 6063605 (-) False AMCG00012732
TU47984 other downstream 3240538 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 3647480 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 4885110 523747 ~ 539591 (-) True AMCG00012628
TU49217 other upstream 1018740 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 3675460 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 6803415 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 7677912 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 12443244 17880225 ~ 17899426 (-) False AMCG00013038

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00053489 True 4974 mRNA 0.40 7 NC_007115.7 10888762 ~ 10909086 (+)
grasscarp (Ctenopharyngodon idella) CI01000020_06066386_06084469.mRNA True 2314 mRNA 0.48 8 CI01000020 6065829 ~ 6084469 (-)