RNA id: AMCG00012714


Basic Information

Item Value
RNA id AMCG00012714
length 657
RNA type mRNA
GC content 0.49
exon number 7
gene id AMCG00012714
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 5634465 ~ 5639532 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtcatttattattaGGTTAATTCACAACAGTTTGGCTGCCATTCGTGACTTCATCTTAAgccttttctttaaaaagcGACCAGCCATAACCCTCGAGGACCCCAATATCAAGTACACCTTACGGCTGGTAGACAAAGAAATTATAAGTCACGACACCAGGAAGTTCCGCTTTGAATTGCCATCTGCGGAACATGTACTAGGGCTTCCTATTGGAACATTTGCCATCCGGCCTGACAAGAAATCCGAGCCAGAGATCAAGATTGCGAAACAGCTAGGAATGATAGCTGGTGGGACTGgGATTACACCCATGCTGCAGATTATCCGGGCAATCATGAAGGATCCGAAGGATAAGACCGTCTGCTCCTTGTTGTTTGCAAACCAGACTGAGAAGGACATTTTACTgcgcccagagctggaggaacTCCAGGTTAACCACCCTGATCGCTTCAAGCTGTGGTTCACCCTGGACAAGGCTCCGGAAGgctGGGAATACAGCCAAGGGTTTATCAGCGAGGACATGATTAAAAGCCACTTGCCAGCCCCTGGGGAGGACACTCTCATCCTGATGTGTGGACCTCCTCCCATGATCCAGTTTGCCTGCAACCCTAATCTGGATAAAGTAGGCCACGCCAACGGCAGGAGATTCACGTTTTAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48984 lncRNA downstream 88396 5545834 ~ 5546069 (-) True G39295
TU48968 lncRNA downstream 225705 5388193 ~ 5408760 (-) True G39281
TU48922 lncRNA downstream 351779 5220771 ~ 5282686 (-) True G39245
TU48923 lncRNA downstream 383994 5234162 ~ 5250471 (-) True G39246
TU48887 lncRNA downstream 424606 5206604 ~ 5209859 (-) True G39231
TU49068 lncRNA upstream 138758 5778290 ~ 5812036 (-) True G39371
TU49079 lncRNA upstream 176940 5816472 ~ 5895114 (-) True G39377
TU49078 lncRNA upstream 178654 5818186 ~ 5895114 (-) False G39377
TU49135 lncRNA upstream 421458 6060990 ~ 6063817 (-) True AMCG00012732
TU49166 lncRNA upstream 628703 6268235 ~ 6268938 (-) True G39443
AMCG00012713 mRNA downstream 197484 5424701 ~ 5436981 (-) True AMCG00012713
AMCG00012712 mRNA downstream 220125 5412206 ~ 5414340 (-) True AMCG00012712
AMCG00012711 mRNA downstream 330572 5288028 ~ 5303893 (-) True AMCG00012711
AMCG00012710 mRNA downstream 431300 5190953 ~ 5203165 (-) True AMCG00012710
AMCG00012707 mRNA downstream 463243 5153275 ~ 5171222 (-) True AMCG00012707
AMCG00012716 mRNA upstream 152506 5792038 ~ 5805393 (-) True AMCG00012716
AMCG00012715 mRNA upstream 191086 5830618 ~ 5831514 (-) True AMCG00012715
AMCG00012730 mRNA upstream 350571 5990103 ~ 5997112 (-) True AMCG00012730
AMCG00012732 mRNA upstream 412832 6052364 ~ 6063605 (-) False AMCG00012732
AMCG00012731 mRNA upstream 432391 6071923 ~ 6086826 (-) True AMCG00012731
TU47984 other downstream 3450302 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 3857244 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 5094874 523747 ~ 539591 (-) True AMCG00012628
TU49217 other upstream 816189 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 3472909 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 6600864 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 7475361 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 12240693 17880225 ~ 17899426 (-) False AMCG00013038

Expression Profile