RNA id: AMCG00012715


Basic Information

Item Value
RNA id AMCG00012715
length 897
RNA type mRNA
GC content 0.50
exon number 1
gene id AMCG00012715
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 5830618 ~ 5831514 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGACACTGAAGACACTGTCAATGATtatgaggaggaggaaggaggataTGAGGAAGAAGACGAAGAGGAGACACTGCTGGGAGAAgcagaggcagaggaggaggaggaagagaagctGCCTGAGGAACTAATTTCTGAGGAGGAAGCAGAGGACGAAGAAGCAGACGAGGATACTGCGCAGACTGTGGAGGAgcaaaatgaagaagaagaagcgaAGCCTAAGCCAAAACCTTACATGCCCAATATTGCGCCCCCCAAACTCCCTGATGGCGAGAAAGTGGACTTTGATGATTTCCACAGGAAGAGGCTGGAGAAAGACTTCACTGAGCTCCAGACCCTCATAGAGGTTCACTTTGAGAGCCggcagaaggaggaggaagagctgATTGCCCTGAAGAGCAGAATTGAGAACCGGCGCTCTGAAAGAGCCGAGCAGCTGCGCATtcggactgagagagagagggaacggCAGACCAGGGTGACTGAGGAAAGActgaggaaggaggaggaggaagccaAGAGAAAAGCCGAAGAAgatgcaaagaaaaagaaagtcttCTCTAACATGTCCTTTGGAGGCTACTTGCAGAAGGTGGATAAGAAGACGGGAAAGaagctgacagagagagagaagaagatgAAAATCCTTATGGAGAGGCGTAAAGCTTTAAACATCGACCACCTGAACCAGGACAAACTGTCCGACAAGGCAAAGGAACTGTGGCAATGGATGTACCAGCTGCAAACGGAGAAGTTTGACCTGATGGAAAAGCTAAAGAGGCAGAAATATGAGATTTCACTTTTGAGGAATCGGGTCAGCGATCACCAGAAAGTGAAACCAACCAAGGGAGCCCGCGGGGGGAAAAGCAAAGTAGGCGGCCAGTGGAAGTGA

Function

GO:

id name namespace
GO:0006937 regulation of muscle contraction biological_process
GO:0005861 troponin complex cellular_component

KEGG:

id description
K12045 TNNT2; troponin T, cardiac muscle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49068 lncRNA downstream 18582 5778290 ~ 5812036 (-) True G39371
TU48984 lncRNA downstream 284549 5545834 ~ 5546069 (-) True G39295
TU48968 lncRNA downstream 421858 5388193 ~ 5408760 (-) True G39281
TU48922 lncRNA downstream 547932 5220771 ~ 5282686 (-) True G39245
TU48923 lncRNA downstream 580147 5234162 ~ 5250471 (-) True G39246
TU49135 lncRNA upstream 229476 6060990 ~ 6063817 (-) True AMCG00012732
TU49166 lncRNA upstream 436721 6268235 ~ 6268938 (-) True G39443
TU49191 lncRNA upstream 453941 6285455 ~ 6287935 (-) True G39462
TU49269 lncRNA upstream 806993 6638507 ~ 6695924 (-) False AMCG00012751
TU49302 lncRNA upstream 941454 6772968 ~ 6847396 (-) True G39546
AMCG00012716 mRNA downstream 25225 5792038 ~ 5805393 (-) True AMCG00012716
AMCG00012714 mRNA downstream 191086 5634465 ~ 5639532 (-) True AMCG00012714
AMCG00012713 mRNA downstream 393637 5424701 ~ 5436981 (-) True AMCG00012713
AMCG00012712 mRNA downstream 416278 5412206 ~ 5414340 (-) True AMCG00012712
AMCG00012711 mRNA downstream 526725 5288028 ~ 5303893 (-) True AMCG00012711
AMCG00012730 mRNA upstream 158589 5990103 ~ 5997112 (-) True AMCG00012730
AMCG00012732 mRNA upstream 220850 6052364 ~ 6063605 (-) False AMCG00012732
AMCG00012731 mRNA upstream 240409 6071923 ~ 6086826 (-) True AMCG00012731
AMCG00012735 mRNA upstream 403162 6234676 ~ 6239419 (-) True AMCG00012735
AMCG00012736 mRNA upstream 425316 6256830 ~ 6257924 (-) True AMCG00012736
TU47984 other downstream 3646455 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 4053397 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 5291027 523747 ~ 539591 (-) True AMCG00012628
TU49217 other upstream 624207 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 3280927 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 6408882 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 7283379 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 12048711 17880225 ~ 17899426 (-) False AMCG00013038

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU43959 True 307 lncRNA 0.42 2 NC_048565.1 36498720 ~ 36499200 (-)
eurasian perch (Perca fluviatilis) TU43959 True 3031 lncRNA 0.45 13 NC_053114.1 40564244 ~ 40589664 (-)
mexican tetra (Astyanax mexicanus) TU43959 False 1096 lncRNA 0.36 4 NC_035899.1 72841851 ~ 72844221 (+)