RNA id: AMCG00012716


Basic Information

Item Value
RNA id AMCG00012716
length 2099
RNA type mRNA
GC content 0.47
exon number 9
gene id AMCG00012716
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 5792038 ~ 5805393 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAgaacacaatcaatcaatcaatcaataagaaACAGCTGCTGACAAGGGGTCAACCGATCTCAGTCAATCTAGAAACTCCACCCGCAACTATGATGTTGGCAAGAGAAAGACCAGGTGCGGGTAGGACCATCCCCAAGCAGATCTCAGGAAAAGGTGCAGGGTCACAGCAGAGCCATAGTAGGGCCACAGGGCAGTGTTCTTCACAAGCAAGACAGGCTGAGAAAATACCTCGGAAGGAGGCTACCGCTCTGAAGACCTGTGCAGATGAACGAGGGAGTAGTAGGAGCAACAGAGTCCCTGGACACCGGAAGGAGTCCAGCACCGCCTTGGCCCAGAACCTTAGCAGACTGGCTGTCAGTGACCAACGGTCCATTGCTTCCAGGAGATCAAGAGCAGTAAAGGCCAGTGGCATTACCCCACCTCGGGCCTCACCAACTGCACCACCCTCCAGAGCCCCCAGCAAAATTGCCCACCTGCAGGATGTGGCCAGGCTGATGCTGCACAGACCCTGCAAAAACATCATTGTGGTGGCTGGGGCTGGGATCAGCACTGCCAGTGGAATCCCAGATTTCAGGACACCAGGGACTGGGCTTTATGCAAACATGAAGAAGTACAACATCCCCTACCCAGAAGCCATCTTTGACATCGACTTCTTCACCTGTGACCCGCAGCCTTTCTACTCGCTCGCCAAAGACCTGTATCCTGGATCTTACCAGCCCAACTACATTCATTACTTTGTGAGGATGCTGCACGAGAAAGGGATGCTTCTGAGAATGTATACCCAGAATATTGATGGCTTGGAGAGGATGTGTGGCATTCCAGAAGACAAACTAGTGGAGGCTCATGGGACGTTCTCCTCTGCATCATGCCATTTGTGCTACGCAAAGTTTCCAGCCAAGGAAGccaagaaATCTATATTGAGCAACAAGATCCCTAAATGCAAAATCTGCCAAGGAACTGTAAAACCCGACGTAGTGTTTTTTGGAGAAGATCTCCCCCAGAAATTCTGTTTGTACTCCAAAGATTTTCCGAAGGCAGATCTCCTCATTGTGATGGGAACATCCCTGCAGaTTGAACCTTTTTCCAGCATTATCGATACTGTCCGGCCTAGCGTACCTCGCCTTCTGCTGAATAGAGCTCCTGTAGGGCCCTTTCAGAAGGTCCCACCAAAGAGCACAGATGTCATGGAGCTAGGGGACCTGGTGGAAAGTGTGAAGAAGCTTGCCAGGATTCTGGGCTGGGACGGTGAGATTGCTGATCTGATCAAACACCAGGAACCTGGGCTGAGCCCGAATGACCATTCATCAGTGGGCAGTAAGGAGTCTGTCAAGGTGCCACCTCCACCTGTAGCCAGAGCAAAGGTCAACCAGAAAAGCAATGGGGAGAACACAAACGGGAGGAGGGTCCTCAGGTCGTCTTCTGTCCCCGCTTGTCGAGATGGGGGGCAGGGACGGCGAGACAGCAGCAGCAATGATAGCAGCTCCTCCTCTGGCTCAGACACAGAGCACAATCTCTTCCACCCCCAGTAATTAAGCTAAACGCTGAGACGTTTCTAATGACCTATGGAACCGATGAAGCCTTTCACTGTGGAGAATATTTCAATagtgtattaaaatgttactgaatTTCCTATTTTTATACTGTTCTGTATGTGTCATGTAATTTGCTGTGTcaatttctgtatgtatatgctactagatttttaaaataagttttattgaaaacctgccattttttttccattaaaggCTGAACTTAtccttttgtcattttaatttagtgtaaCGTGTTGCCAAATCCTGTGGACATAAGGAGTATACAAGTCAACACTATATCGGTCTTGACCACATTAGAATCCTCATGtcattcaaatacaaacaaatattgtaaGCGAAGACTGACATCGGTAGAGAGCTCATCAATCATCCTATTCAATACTTTTATTACTAGAGGCAGCCAGATTTTGAAGTTATACTGACAAGTTTGTATGACTGGGACTGTCAAAGGGAAACATTGCAGTGAAAAGCATAATCATCCTTcaatccaaaaagaaaaaaagaaaaggaaaacacaggctggaatgtgaatgaaactg

Function

GO:

id name namespace
GO:0006476 protein deacetylation biological_process
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0070403 NAD+ binding molecular_function

KEGG:

id description
K11412 SIRT2, SIR2L2; NAD+-dependent protein deacetylase sirtuin 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48984 lncRNA downstream 245969 5545834 ~ 5546069 (-) True G39295
TU48968 lncRNA downstream 383278 5388193 ~ 5408760 (-) True G39281
TU48922 lncRNA downstream 509352 5220771 ~ 5282686 (-) True G39245
TU48923 lncRNA downstream 541567 5234162 ~ 5250471 (-) True G39246
TU48887 lncRNA downstream 582179 5206604 ~ 5209859 (-) True G39231
TU49079 lncRNA upstream 11079 5816472 ~ 5895114 (-) True G39377
TU49078 lncRNA upstream 12793 5818186 ~ 5895114 (-) False G39377
TU49135 lncRNA upstream 255597 6060990 ~ 6063817 (-) True AMCG00012732
TU49166 lncRNA upstream 462842 6268235 ~ 6268938 (-) True G39443
TU49191 lncRNA upstream 480062 6285455 ~ 6287935 (-) True G39462
AMCG00012714 mRNA downstream 152506 5634465 ~ 5639532 (-) True AMCG00012714
AMCG00012713 mRNA downstream 355057 5424701 ~ 5436981 (-) True AMCG00012713
AMCG00012712 mRNA downstream 377698 5412206 ~ 5414340 (-) True AMCG00012712
AMCG00012711 mRNA downstream 488145 5288028 ~ 5303893 (-) True AMCG00012711
AMCG00012710 mRNA downstream 588873 5190953 ~ 5203165 (-) True AMCG00012710
AMCG00012715 mRNA upstream 25225 5830618 ~ 5831514 (-) True AMCG00012715
AMCG00012730 mRNA upstream 184710 5990103 ~ 5997112 (-) True AMCG00012730
AMCG00012732 mRNA upstream 246971 6052364 ~ 6063605 (-) False AMCG00012732
AMCG00012731 mRNA upstream 266530 6071923 ~ 6086826 (-) True AMCG00012731
AMCG00012735 mRNA upstream 429283 6234676 ~ 6239419 (-) True AMCG00012735
TU47984 other downstream 3607875 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 4014817 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 5252447 523747 ~ 539591 (-) True AMCG00012628
TU49217 other upstream 650328 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 3307048 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 6435003 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 7309500 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 12074832 17880225 ~ 17899426 (-) False AMCG00013038

Expression Profile