RNA id: TU49057


Basic Information

Item Value
RNA id TU49057
length 3368
RNA type TUCP
GC content 0.37
exon number 3
gene id AMCG00012718
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 5807846 ~ 5823515 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTCACTTCCCTTGTATGCGTTGACACCGCCGTGAAAGAAGGCGCTGTGTGGGGCGCCACGTATGCAGCAGAGCAAAGTAAAGCAAGAAAAAGCGGAAAAAAGCCCGGTTCTCAGGCGTAATTTGGAGAACACAGATTATGAGGCATctgttatttcattttgatgtgtTTTCCAGGTGGTTTTGACTTAAAAAGCATATCGGGGTTGTGGAAACAGCTGCAAGTTTGTTGCACGTAACAATTACATCACAGTTCGTTTTGCAAACCTGaaacaaaatgagtCAAAAGGACAAGGACCAAGATGAAGTCCCCCCATATCTCAGAGATGAACCAACAGAAGATTCCAGTAAAGATCATCCTCAGCCACAGCCTGGCATGCTGTCGCGGGTCACGGGGGGGATCTTCAGTGTGACGAAGGGAGCAGTCGGTGCCACGATCGGTGGGGTGGCCTGGATTGGAGGCAAGGGCCTGGAGGTTACCAAGACTGCGGTGACCTCGGTCAGCGCGGTGCCAGCTATGGGGGTGGGCCTTGTGAAAGGAGGGGTGTCTGCGGTGGCTGGTGGAGTGTCAGCTGTGGGCTCAGCTGTTGTCAGTAAAGTACCACTCACTGGGAAGAAGAAAGACAAGTCGGATTAAAGACTGGACTGCAGTAAGAAAcgtgcacattttctttttcctgttgtttcaaGCCTTTTGGGAGATGaggctttatatatatataaagaagacTACAGCAATGGTATTAGAATGGCAGgagaaatgtaagaaaattaAGCCATATGCTCCAAGACACTTTAAACATACAGAATGGCTGTGCTCAACTAAATGAGCCATTTTGACTATTATCTCACACAGCCTATCTTGGCCTGCTTTATATGTGTTTGTGACTGAgataatgttatgtttttaaagtgcaGAAGCTTTCTTTTATGAAGCATACAATTCTTTATTGTACAATGGAACTATCACATTTGTTGGAATATTTGTCTTAAGACTGCATCAggcagggaaaagaaaaaaaaattgtgccatcatctgtaagtgtgtgtgtaggtgttcATGTTTTGGGCATTCCTATGGGTTTATGCTAGCAGATGAACAAATGGCATTTCAGTGTTAGTgactgatatatatttattgccaTTTTCAGTCACTGAGAATCTATGCAATGGTTGACATGTAAGTAATTTTTAATCCGATAAGTAAAATGAAGCAGTGTGCTCTGAACTAAAAGACAAGAATCTAGGACAACTTGATTTCAAAATCCAGCTGCCGTTGAATTCCTCTGTGAACCAATACGCATTTTCCTGTTAGATGATGAACTAACCTGTACCATTTAACAAGAAACCTTTCTGACAGCTTACATGAAATAcccagggaaaaaaaaaacgctcCTCAAATCAGCCAATATCAGTGCactcttgatttattttgttcctggGAGTTTCAACTCAGTGGTACATTGTCTACAGCgtacaaatgtgttttggtgTACCTTCTGTTTCGACAATATTACACTTCACTTCCAATCATGCAGAAGCCAAAATTTAACTCTTCAATCGCTAAGGTGTAtgtgccacaaaaaaaaaaaaaaaaatcccagtcattcctacattattttcttcattgatGTGGAATGACTGTGCTGTAGCAcaagcatatttttattttttttaatgtttttcattgttgaACTTCTCTATCCATGCAAAGCTTTCGAATACAATGTGAATGCTGGACACACAATGGTTCACCAAAGTGTCTTCTGCAAAGTACCAAACAAGATAACTgtgactgtttaaaataaatgaattgataATCCTACATCTCTTTCCAAAGCAATGAACATcaattatcttttctttttttttgtgatgtatATAAAGCTCTCAACTGCCATAAATGTGTGTTGTCTATTACTTATTGTTAGGCTTCCACTGTAAGAGTTTGCTCCATGCATAATGCTTTGGGTAAACAAGCGAAGGTTTATCTTTTAGTGATGCTTTAAAAAAGCATAATGACAGGCTTAATTGAATTGTGGTGCAAGGgtcataaatgttttattccttaaGTGATCATTTTCCTAAACTGCCGTAACTTTTATCAGCTCTCTCTGACCTGCAGTAGCATTTGAAATGTAGATGTATAGGGGCCCTTTTATGCTGCATTTAGAAGACCGAAAACCTTCATGAaagcagtatatattttaactcATCTACTGTATGAGGAGACAGAAGTATGTTATTTttctgagaaaaataaaccccttgaaaaacatttaagacaATTCTATAACTGAACACtgtcattgtttgtttgtattgtggCTCTGAGTTActtttggttaaaaaaacaattcttatGACCTAAAAACTTGTTACCTATTATCTCACTAGTtatggtaaaatatatattttataggtgTGTGCTTATAGTTACAGATAAAATAATGTGCACCcttcatttaaaatggttatttgctcatttaatttgaattgaataaGTACTGGTTATTATCCATTATCAGTAGTATTTCCAAAGTGTATCTGACATTGATTCCAGGTAAGTGATCTGAGCTCAGTCAAAGGGTGTGACGAGCATCACTCTTAACTGATTTTATAGGTATAGCTCAAACCATTTAACTAAATCAAATGTGGGAtacaattgtttcaaatgaagggtgccAATACTTTTGCCTCTGGCTCATTGTTtattctctcacacactcaaTGTGGTTAATATAATATTAGAAGTTACATAAGATGGGGCTTCTGCAATCTTGGTGTCaatgagttttttgttttcttttatgttcaAGGCAATGTTTCATGGTGtgtaattttgtaaatgttgcatTCTTGTAAATTCATCCCCTTCCTTTTCACATTgaaatatgtaggctatattttcATAGTAATGCATAAAACCAACTTTTTTGAATATGGTGCAAACTGACTGAGAGACATACGGTGGATGAAAAAGCACCAAAGTGATTCATGCATCCCGTTTAATGTGTACTTATCAAGCGGACCGCAATGTCATACAACATTTGAATATAAACTTTTATGTATGAATTTAGTGTAATAAACTGTGAAAGCTGGAACTAACCCTATTCTATTTCATGTCTTTGCTTTGTTGTATATAGTTTTCTAATAGTATGTTATGAACGTTTGTCTGTAAatctaaattattatatttccccCCCCTTTCACTATACttttaatatacagttaaatgagTAGTTCAGGTGTCCTGGACAATTTTGATTTTTATCAAGGTTTTTATGGTATGCCTGACctaacaaacatgttttactatATCTAATGTTCTTGGTGACATTCTAAAatcaagcaaaataataaagttcA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49015 lncRNA upstream 159739 5647774 ~ 5648107 (+) True G39321
TU48966 lncRNA upstream 370684 5436833 ~ 5437162 (+) True G39279
TU48836 lncRNA upstream 733720 5037547 ~ 5074126 (+) True G39193
TU48821 lncRNA upstream 851979 4949240 ~ 4955867 (+) True G39186
TU48563 lncRNA upstream 1290215 4517136 ~ 4517631 (+) True G38964
TU49089 lncRNA downstream 99294 5922614 ~ 5923023 (+) True G39382
TU49104 lncRNA downstream 229828 6053148 ~ 6056572 (+) True AMCG00012734
TU49169 lncRNA downstream 461614 6284934 ~ 6287936 (+) True G39445
TU49225 lncRNA downstream 689328 6512648 ~ 6536393 (+) True G39490
TU49284 lncRNA downstream 938645 6761965 ~ 6762278 (+) True G39538
AMCG00012720 mRNA upstream 16361 5767206 ~ 5791485 (+) True AMCG00012720
AMCG00012721 mRNA upstream 44699 5731990 ~ 5763147 (+) True AMCG00012721
AMCG00012725 mRNA upstream 83092 5695131 ~ 5724754 (+) True AMCG00012725
AMCG00012722 mRNA upstream 161219 5640001 ~ 5646627 (+) True AMCG00012722
AMCG00012717 mRNA upstream 176727 5630403 ~ 5631119 (+) True AMCG00012717
AMCG00012729 mRNA downstream 209433 6032753 ~ 6039590 (+) True AMCG00012729
AMCG00012734 mRNA downstream 229922 6053242 ~ 6056832 (+) False AMCG00012734
AMCG00012737 mRNA downstream 277261 6100581 ~ 6101610 (+) True AMCG00012737
AMCG00012741 mRNA downstream 369940 6193260 ~ 6231290 (+) True AMCG00012741
AMCG00012740 mRNA downstream 420587 6243907 ~ 6264794 (+) True AMCG00012740
TU48986 other upstream 255079 5552417 ~ 5552767 (+) True G39297
TU48550 other upstream 1434272 4370313 ~ 4373574 (+) True G38954
TU47823 other upstream 4983138 820524 ~ 824708 (+) False AMCG00012639
TU49223 other downstream 694088 6517408 ~ 6517921 (+) False AMCG00012748
TU49477 other downstream 1902168 7725488 ~ 7727828 (+) True G39670
TU49527 other downstream 2012026 7835346 ~ 7836214 (+) True G39709
TU49939 other downstream 3289140 9112460 ~ 9113101 (+) False AMCG00012820
TU50138 other downstream 4613587 10436907 ~ 10444447 (+) True G40224

Expression Profile