RNA id: AMCG00012720


Basic Information

Item Value
RNA id AMCG00012720
length 5101
RNA type mRNA
GC content 0.41
exon number 9
gene id AMCG00012720
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 5767206 ~ 5791485 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTATGTTGTGGTTGTGTATGAAACGGTACTGCAGAATTTCTCGTCACCTCGCTGCAACTTTGGGTTGGAACGGATTTTGTTTGGGAAAGGATGGAGCTGAATAGCGTTTTGTCGAAGCTGGAAAGCGGTAACGAAGAAGACATCGAGAGTCTTTTGCGAGAATACAACCGAGAGAAACTTTGTGAGGGGCTGGTCAGAGTGTTGGAGCGGGATGGACGGGCTTGCTGTCGGACGGCCTGCCTGGAGACACTCCGCATCCTCTCCCGGGACAAGAGGGTTCTGGGACCGGTGGCCACGCGGGAAGGCATGCTGATCCTGGCTGAGCTGGCTGGGCTGCAGGAGGAGGGAGACCGGGCGGTGGAGATTGTAGATGAGCAGGTGGTGGTGGAGGCCTTGAAGTGCCTGTGCAACGTGGTCTTCAACAGTGTGGCGGCCCAGCAGAAGAGTGCGGAGATCAGGTTGGCGGCAGGGCTGTGTGCCCGTCTGAGGACCTACACCACCCAGGGCCTGAGTCACGACGTGGCACTCTTCTCCCTGCGCCTGCTCTTCCTGCTCTCGGCACTCAGGACAGATGTGCGGGCCTGCTTGAGGCAGGAGCTGAAGGCCGTGGACTTGCTTATCAGTGTCCTGGAGCACACTCTCGGCATAAAGTGGGTGGCGGAGTTTGAAGCCGAGAGCGACCCCAAATCTCTGCCTTTACCACTGGAAGAGAATGAACGTGTCATGGAAGCCCTGAAAGCCCTGTTCAACCTCACCTTGTCTGACACCAGTGAAGAGGACGGGGCCCACCAGCTTCGCCTCATCACCGCCATCATGCGCCATCTTTTGATGATAAAGACTCAGACAGAGGACAAAACAGAGGAAGCACACAGTCATGCCATTAATCTGCTGAGCAACATTCCAGTGTCCTGCCTGGATGTGCTGATCTGTGTCCAGAGCCAGGGAGGACTGGAGGAGTTCAACGGGAAGAACATGGATGCAATTGAGGTCCTCCTAGACTTCATGGAGAAGAGGATAGACAAGGCATCAAACTATAAAGAAGGGCTCACCCCAGTGCTGAGTCTCCTGACTGAGAGCTCCAGATACCACAGAGAgatcagaaaatacattaaagccCAGGTACTACCCCCCCTGAAAGATGTCAAGATCCGCCCTGAAGTGGGGACAACAGTCCGGAACAAACTAGTGCGTCTCATGACACACGTGGACACTGGGGTGAAGCAGAGTGCTGCAGAATTCCTCTTTGTCCTGTGCAAAGAGAGTGtggacAACTTGTTGAAGTACACTGGCTATGGCAATGCAGCAGGGCTCCTGGCTGCCCGGGGGCTGCTGACAGGAGGCAGAGGAGATGGGCAGTACTCTGACGATGAAGATTCGGATACAGAGGAGTACAAATCTGCAAAGCCTTTTATCAATCCTATCACTGGCCATGTTGAAGAGCCAATGCCAAATCCCATTGAAGAAATGACCGAGGAACAGAAGGAATACGAAGCGCAAAAGCTGGTGACCATGTTTGACAAGCTGTCcagACAACAGATTATTAGACCAATGGGAGTAAAGCGGGATGGCACCCTAGCCCCATTGGAGGAAGCTATACATCAGTGCACCGTGGAGAGTTGTAGCTCGGATTCGGATTGAAGCGCCACCTGTGAGGATGGTGGCCCTGGCTGATACGCAGGCAGCCCTGTAGTCTCTTCCGTGCATCTTCTGACTCTTGGAGCTGTTCAGCCTGTGGGTGTGGGAGCAACCTTTCCTCTAATTGCTCGCCAGGCAGTGGGCTAATTGTGTAAACAGCATGTAGCTTCAACAGAAATAAGAAGGAAGGACTAGAAGACCTAATACAGGTGATTCCAGGTTGTAGATAATTTAAAACTGGGTAAAAGGGTAGTGGTGTAATTTTTCGGGGgaaggtgtttgtttttttgtttttgttactttgcCTTTTACAGACACAACATGCACTACTGTATATGTGATCAAAAATGAAGGATGCGATTCACTCCTGGGAATAAAACCCACTCCAAAATACTCAAGTAATGATTTCTTTTGACACCCCctcataataaaatgcattacccAAATTTATACTCTGAggcaaaaatgttaattgtttaatgctttgtatttatgtattttcagatcTTGAATGTATTTCAaggttttttgttcttttgtgatTTTACTTGACTCGGTTCTTATATTACAATCTGCTATCTCAGATTTTACTGTATCCTCTTTGCATTCACTTGAGATGACTTAAGGCGTCTCATTTGCCATTCAAAACTGTTGttcatttgattttgttatttaaaaaatgtaaaccacttAAAACGTGTCTCCACTTCATATAACCGAAGAATATTGTCTCTTAAAGATTTGACATAGAAAAACCTTGTCTGTTGTGCATGGCATATGAAAGAATGTTAATACAATTCTGagctcttcttcttttttttctattttgtacaCCGATTCTATAAAATGTTTGTCTATTGCTTCAATTAATGGATGTTTTATATGGGGGGGAAAAATCTTTTTCTAATATTTGCTGCAATATTACTTAATATATaggtctttttattttactgatcaGAACTTCAAGTTCACTTCCTTGTTTCCAGTTTTCTCCtaaattgttaattttgtatGCCAAGTATTGAGGTGTTTGTTCTTCCTGTTTTGATGATTTGTTATAAAATGCCTGTGCTAATTATGAATTCAAGTAAAATAGTGAATATGGCTGATTGATAGATCTCTAGATGTGTTTATATCCTGTAAGAAGAAGCATTAAAGGAAAGTGTATTCAAGTAAAACACAAGCACAGCCCCAAATGAGACATGCTGGGTCAACATATACTAGGGTTAACtgctatttttgtttaaatattttggaaCCCAGTCTTTTTTCCAGATGTGTACCAATTTAGTCTACTGTCTACAGTGTATTTATGATTTGTCTTTTACCCTTTCAAcaagaacaattaaaaatggaagCTTGTTCTGTTTATGAAGCCCAAATCCCTAAACTGCCCCGATACAGTGATAACCCATTATGTCATGGGAAACCGAAAGAccacaattatttgtatttatttatttatttattttttattaacatttattttcaatagaatacatctttaaaaaattgTGAGAGAGACTACAGCTACTGTAAAACTACTTAGCAACACACCGGGAGGTATATGGCTCTGTTTTGCAGAAGCCAGTACCTTGCTCTTTGGGGCATCTTGAATCATGGGAATAATTTGTATTCTCTGGAAATGCAGAAAACTGCACTGCTTATTAGAAAACTGCTGCTCTTATGAACTTTATGTGCACTGAGAAGCTTCAATTTTCTTCAGGAATTAAGATGTTGATCAGAATGGGAAGTCAGTCACAAAATGTTCACTACTAAGCAGAAAACATGTTTAAGGAAGGGGCAGGGGGATAGCGGGTACAGAATCCATTGATTGAATGTTCAGTAGTTCCCGCTAAGTATATGGTAATTGATTAAATgtgaggtttttgtttgtttttaaagattgtgGGAAGAGACATCCTTTTAAATCTCTCCACACcctgataaaaaaatatcctaAAGTGTTCTAAATGGTACAGTAATTAATCTTGGGTAGGTGTCTTTAATTATCGCTTCCTGGTAGGTCATGAATTGAGATTATTTTACTTCCCTCACACAAATCACAGTAAAACTTGTGTAAAATTGTGTTCTACAAAGTGTAGAACAGACATTTCCCATAACAAAATCGCATAACTAGCCCTCCCCTGGTTAGTCACGTCAAACTTTTTAGATTTAGAATATCATTTTCCAAAACCTTTGCTGGAATATTGCATgttaaaattacattgtttttcaattgaACCAGTCTGCCCTTTGTCTTTCAGTATCTTCAGTTACCCTTTTACAACACTGCTGCAAAGATGATTCGAGatttacttacaaaataaagGATTTTGGTGTTAACATTTAATGATGTTTAATGGAAAGTTTTGATAAACCTATAATTGGATTGCACATAAAGGGAATTAGTGCTTTCTCAGACAATGTTCTAATTGGCTTATAATTAAACATTCTAACTTGGATTACTTACAGCATGTACTTGGTAcgaatgtttaaaaaaacttaTATCCACAACTTGGCAATAAATATCTGTATAGTGTCTCTGATCTACAGTATGCACTCTGGTGTTTTGAGTGGGGAAAGAAAAGATTCACAGTACAAAATAATCCTGCatgatgtcttttttttgttttaatcgtTTTATTGTTTATCTGATCTGAAATTGAATGTCTTTTtatcattaaatgtattacctATTCATTTTCTCTGTAAAGGCCTTGATTTTGAATTGACGTCTACTCCCATTTTAAAAGCCGCAGTCTGTCTAGGTAAGACGAAGTGTCACTCTTTGGAAAAGTTCAAACGTCGGCAGTTAATTCAGAGCTAGACAgctgatttttcctttttctaattCCTTTTGCCAATTAATTGGAAGGGAGATATTCACTTGAATATTTCCCACTGTCAAATCCAAGTCGAAGCTGATTGTGGAAAAATAGTCTggtgatggttttgtttttgtagcctGCTAGATTTATTTAGACCTTTCGCCCCGTCTGAAAGGTCTAAATAGAGTTTCAGAAATATAACCACCCCAAAGAAAAGGCCTGGTTTGTCACTATCTCATCTTATTTAGTGTAAACCACCAGTGAAACCTCCTTTGTCTTTCAACCACTGCTTCGGTCTCTGGACTGGATCCAAACACGTCTGTATGTGGAAATGGAGGATATACTTCCAGAATAAATTTTCCACTTGCAGAAAGACACTGCATTGTGAACACTTTTCCTGAATAGTCATGGTCAGAATATTTGAAAACCCAGTAAGAAACATTGAAATGTGCATAAGGATTCTTTGTCCGATACTGGAGGATTGTCTTTTCTTGGACTTTAGCCAAATGGGACACTTAAGTTCACTTATCTACGGCTTCCTgcttttctaaattaaactgtactgtactttaaaatgtatcaccCCCTATGTTAATCATACAATTAGCTTTTTAAAGTGTGCACAAGAAAATAG

Function

GO: NA

KEGG:

id description
ko00562 Inositol phosphate metabolism
ko04070 Phosphatidylinositol signaling system

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49015 lncRNA upstream 119099 5647774 ~ 5648107 (+) True G39321
TU48966 lncRNA upstream 330044 5436833 ~ 5437162 (+) True G39279
TU48836 lncRNA upstream 693080 5037547 ~ 5074126 (+) True G39193
TU48821 lncRNA upstream 811339 4949240 ~ 4955867 (+) True G39186
TU48563 lncRNA upstream 1249575 4517136 ~ 4517631 (+) True G38964
TU49089 lncRNA downstream 131129 5922614 ~ 5923023 (+) True G39382
TU49104 lncRNA downstream 261663 6053148 ~ 6056572 (+) True AMCG00012734
TU49169 lncRNA downstream 493449 6284934 ~ 6287936 (+) True G39445
TU49225 lncRNA downstream 721163 6512648 ~ 6536393 (+) True G39490
TU49284 lncRNA downstream 970480 6761965 ~ 6762278 (+) True G39538
AMCG00012721 mRNA upstream 4059 5731990 ~ 5763147 (+) True AMCG00012721
AMCG00012725 mRNA upstream 42452 5695131 ~ 5724754 (+) True AMCG00012725
AMCG00012722 mRNA upstream 120579 5640001 ~ 5646627 (+) True AMCG00012722
AMCG00012717 mRNA upstream 136087 5630403 ~ 5631119 (+) True AMCG00012717
AMCG00012723 mRNA upstream 137664 5603313 ~ 5629542 (+) True AMCG00012723
AMCG00012718 mRNA downstream 16372 5807857 ~ 5823515 (+) True AMCG00012718
AMCG00012729 mRNA downstream 241268 6032753 ~ 6039590 (+) True AMCG00012729
AMCG00012734 mRNA downstream 261757 6053242 ~ 6056832 (+) False AMCG00012734
AMCG00012737 mRNA downstream 309096 6100581 ~ 6101610 (+) True AMCG00012737
AMCG00012741 mRNA downstream 401775 6193260 ~ 6231290 (+) True AMCG00012741
TU48986 other upstream 214439 5552417 ~ 5552767 (+) True G39297
TU48550 other upstream 1393632 4370313 ~ 4373574 (+) True G38954
TU47823 other upstream 4942498 820524 ~ 824708 (+) False AMCG00012639
TU49057 other downstream 16361 5807846 ~ 5823320 (+) False AMCG00012718
TU49223 other downstream 725923 6517408 ~ 6517921 (+) False AMCG00012748
TU49477 other downstream 1934003 7725488 ~ 7727828 (+) True G39670
TU49527 other downstream 2043861 7835346 ~ 7836214 (+) True G39709
TU49939 other downstream 3320975 9112460 ~ 9113101 (+) False AMCG00012820

Expression Profile