RNA id: AMCG00012730


Basic Information

Item Value
RNA id AMCG00012730
length 1158
RNA type mRNA
GC content 0.49
exon number 3
gene id AMCG00012730
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 5990103 ~ 5997112 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTGAAGAATGTAGGCTGCCAGGGGGCTCCAATGTGGCTGAGAGGATGGAGTGCTCCTGGAAGacagtgctgctgctggtgtGCGCCTCACTGGGGATCCAGTACACTGCCATTCGCTCTCTCAGAGATTCTTTCAGCTCCCCCTGCCAAGGCAGTCATCACTGCCAGCACAGAGAACTAAAAGAGTACACGTGGAGATCCCTCTGCGATGATGGATTGTCATTTGGTCCCTTCAACTCTCAGAACAGGAAACACATAATTCTTTTTGCTACCACTAGAAGTGGCTCATCCTTCACTGGACAGCTGTTTAACCAACATCCTGACATATTTTATCTCTTCGAACCCCTCTACCATGTCCAGCAGGCATTCACCAACTCCAGCACGAGGCTTCGGAAAATACTGGACCGCAGAGCCCTGCTTGGGGCATACAGGGACCTCTTGCAGAACCTGTACAATTGTGACTTCTATTTCTTGGAGAATTACATCAAACCGGAGCCCAAGGACCATGTCACCAGCTCCTTCTTCCGGAGGGGATCCAACAGTGCCTTATGCTCTCCCCCGGACAGAGGCTACATGGCCATCAAAACCGTTCGCATCCCTGAGATCAAAGACCTGAGGATATTGTCAGAAGATCCTAGACTAAACCTGAAGATCGTACACTTGGTGAGGGACCCTCGCGGGATTCTAGCATCAAGGATGGTCGCTTTCATGGATCAGTTCCGAGCCTGGAAAATATGGAACGCCACTGGCAGAAGGCCCCACTATGTGGATCTCGCCCAGATTACCCGGACTTGCCAGGATCTGTCTGACTCGGCCGAAACGGGCTTTCAAAAACCGTCGTGGCTGAAAGGGAAGTACTTGCTAGTTAGGTATGAGGACTTAGCTAGGAACCCAGAGGACAAGGCCAAAGACATTTACAAGTTTATTGGCCTTGAAATGGATGAAAAGGTCCGCACATGGATAATACACAACACCAACAGAAGCGCGGCTCAAGAAGGGAATTACAAATTTTCAACAACCAGAAACTCTAAAGCCACTGCTGAAAGCTGGAGATTAAACCTAGCTTTTGACATTGTCCAGACAGTCCAAAGTctttgtaataatacattatcttTACTAGGGTACAAGATTGTGAATTCTGTGACTGAGCTGAGGAAT

Function

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49079 lncRNA downstream 94989 5816472 ~ 5895114 (-) True G39377
TU49078 lncRNA downstream 94989 5818186 ~ 5895114 (-) False G39377
TU49068 lncRNA downstream 178067 5778290 ~ 5812036 (-) True G39371
TU48984 lncRNA downstream 444034 5545834 ~ 5546069 (-) True G39295
TU48968 lncRNA downstream 581343 5388193 ~ 5408760 (-) True G39281
TU49135 lncRNA upstream 63878 6060990 ~ 6063817 (-) True AMCG00012732
TU49166 lncRNA upstream 271123 6268235 ~ 6268938 (-) True G39443
TU49191 lncRNA upstream 288343 6285455 ~ 6287935 (-) True G39462
TU49269 lncRNA upstream 641395 6638507 ~ 6695924 (-) False AMCG00012751
TU49302 lncRNA upstream 775856 6772968 ~ 6847396 (-) True G39546
AMCG00012715 mRNA downstream 158589 5830618 ~ 5831514 (-) True AMCG00012715
AMCG00012716 mRNA downstream 184710 5792038 ~ 5805393 (-) True AMCG00012716
AMCG00012714 mRNA downstream 350571 5634465 ~ 5639532 (-) True AMCG00012714
AMCG00012713 mRNA downstream 553122 5424701 ~ 5436981 (-) True AMCG00012713
AMCG00012712 mRNA downstream 575763 5412206 ~ 5414340 (-) True AMCG00012712
AMCG00012732 mRNA upstream 55252 6052364 ~ 6063605 (-) False AMCG00012732
AMCG00012731 mRNA upstream 74811 6071923 ~ 6086826 (-) True AMCG00012731
AMCG00012735 mRNA upstream 237564 6234676 ~ 6239419 (-) True AMCG00012735
AMCG00012736 mRNA upstream 259718 6256830 ~ 6257924 (-) True AMCG00012736
AMCG00012742 mRNA upstream 292519 6289631 ~ 6327075 (-) True AMCG00012742
TU47984 other downstream 3805940 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 4212882 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 5450512 523747 ~ 539591 (-) True AMCG00012628
TU49217 other upstream 458609 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 3115329 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 6243284 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 7117781 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 11883113 17880225 ~ 17899426 (-) False AMCG00013038

Expression Profile