RNA id: AMCG00012734


Basic Information

Item Value
RNA id AMCG00012734
length 354
RNA type mRNA
GC content 0.51
exon number 4
gene id AMCG00012734
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 6053148 ~ 6056832 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGAAGGACAAAGTTCACCCCAAACCCATCCGGCTCATAGCCGCTGCTTGCAACGACATGGGGATCGGAAAAGACGGGCAGTTACCTTGGAACATACCGAAGGAGTTTCAGTTCTTTTTGGACACCGTCACTTCTGTTTCCAGTCcagGCAAGAGTAACCTGCTGATTTGGGGGAGGAAGTGCTGGCTGTCATCCCTTGAGATCACACATCTTTTCCGAAACTGCCTTCACATTGTCCTGAGCAGGACCCTGAGtgaaaagtaCTTTGAGGTCACCATACAGGCGAACCATGAACGATACACTTCCGCTGCTGACAACTGTCTGGCTGAGCAGAGCGCCGATCAGTCTTGA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0006545 glycine biosynthetic process biological_process
GO:0050661 NADP binding molecular_function
GO:0004146 dihydrofolate reductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49089 lncRNA upstream 130219 5922614 ~ 5923023 (+) True G39382
TU49015 lncRNA upstream 405135 5647774 ~ 5648107 (+) True G39321
TU48966 lncRNA upstream 616080 5436833 ~ 5437162 (+) True G39279
TU48836 lncRNA upstream 979116 5037547 ~ 5074126 (+) True G39193
TU48821 lncRNA upstream 1097375 4949240 ~ 4955867 (+) True G39186
TU49169 lncRNA downstream 228102 6284934 ~ 6287936 (+) True G39445
TU49225 lncRNA downstream 455816 6512648 ~ 6536393 (+) True G39490
TU49284 lncRNA downstream 705133 6761965 ~ 6762278 (+) True G39538
TU49318 lncRNA downstream 841165 6897997 ~ 6898230 (+) True G39560
TU49358 lncRNA downstream 1156913 7213745 ~ 7218459 (+) True G39586
AMCG00012729 mRNA upstream 13652 6032753 ~ 6039590 (+) True AMCG00012729
AMCG00012718 mRNA upstream 229727 5807857 ~ 5823515 (+) True AMCG00012718
AMCG00012720 mRNA upstream 261757 5767206 ~ 5791485 (+) True AMCG00012720
AMCG00012721 mRNA upstream 290095 5731990 ~ 5763147 (+) True AMCG00012721
AMCG00012725 mRNA upstream 328488 5695131 ~ 5724754 (+) True AMCG00012725
AMCG00012737 mRNA downstream 43749 6100581 ~ 6101610 (+) True AMCG00012737
AMCG00012741 mRNA downstream 136428 6193260 ~ 6231290 (+) True AMCG00012741
AMCG00012740 mRNA downstream 187075 6243907 ~ 6264794 (+) True AMCG00012740
AMCG00012738 mRNA downstream 208910 6265742 ~ 6269443 (+) True AMCG00012738
AMCG00012739 mRNA downstream 223468 6280300 ~ 6282779 (+) True AMCG00012739
TU49057 other upstream 229922 5807846 ~ 5823320 (+) False AMCG00012718
TU48986 other upstream 500475 5552417 ~ 5552767 (+) True G39297
TU48550 other upstream 1679668 4370313 ~ 4373574 (+) True G38954
TU47823 other upstream 5228534 820524 ~ 824708 (+) False AMCG00012639
TU49223 other downstream 460576 6517408 ~ 6517921 (+) False AMCG00012748
TU49477 other downstream 1668656 7725488 ~ 7727828 (+) True G39670
TU49527 other downstream 1778514 7835346 ~ 7836214 (+) True G39709
TU49939 other downstream 3055628 9112460 ~ 9113101 (+) False AMCG00012820
TU50138 other downstream 4380075 10436907 ~ 10444447 (+) True G40224

Expression Profile