RNA id: AMCG00012735


Basic Information

Item Value
RNA id AMCG00012735
length 3901
RNA type mRNA
GC content 0.38
exon number 3
gene id AMCG00012735
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 6234676 ~ 6239419 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCAATGAAGAGCGTCATTCTCTGGTTGCAGAGTCCGAGCGCAGTTTACAGCATATTCATTGTGAAGATAACAACGCACTTTTTTGCACCAATTGAAATATGCAAGATTCCCAAGGAAGCATCAGCCATCGCATTAACAGCACTAAACTAACAGGAGCTGTGAACACCAGGGTTACCATGTCAGCAAAACGGAGAGACAGGTGCAGTGAAAAAGAGAAGTTCTTGGTGAACACTCTGAGGAGAGAGTCCCGAGAGCTGGACCGCACCCTGCGCTTTCTGAGCCTCCAGTGCCAGAGGGAGCTGTCTACCCTGAGTGGGGCCCAGGAGGAGCTCCAAAGGGCCCTGGCCCGGCTGAGCCAGGCAGGGAGCAAACCTATGGCCTGCAAAGCCCAAGAGGGGAGCTGGCCGTTGCTATGTCCCTTTGAGAGGAGAGGCCCAGAAAGGAGCCGGGGAGAGCACTGCTGTCCCAACCACATCGTGTGCTCCAAGTGCAACCTGAGAATGAGGCTGGCGGACAACGTCACCCGGCGCTTCACCCCCAGTCTGTGGACTATGTACTGCAGAGGCCCCCGGGGAGCTGTAGACTGGTCTTCCAACGACACGCAGGTCTACAGGATCCCCAGCTACATCCTGCACCGTAACCTCTCGGCCTCAGACAATTCTCTGCGCTACCTCCCCTTCATCTCGCTGTAGAAGCCCCGCAGAAAACAGGTAACccataataaacacacaagcaTTGGCTCCTGAGGCAAAACCTCTTCAAATAAATGTCCTTGACTGCTTCAGCTCACGTCGTTCTCCTGAGTCAAACCACTCTGGAAGAAACTGCTGATGACAAACTGGACCAAAGACTGGGAATTCATAGCTGGTTTTGAGTGCAGAGTTTCAGGTAGTTGAAAGTATAGCAGTGAGCAAAATCAATTAGTTTTGGTTTAGCTTGATTCTCCTCGAAAGAAGAGGTTTATAAGTGTGGCCCATTTTGATTACTCTGCAATGCCGCATAGTGCCCACTCTAAATACAACTGACTGAACgtgttttctaaaaatgtgCACGATTTCCAAGATGCTGTATGTCGAATATATAGTTGATGCCTTACAGCACAAAGAAGGCCTATGAATGCCTCCCCTGTAGCCGAAGGTAATTTATTACATGTTGGAGGATCTCAGgggagtgtttatttttcaaactacCCTGTGATCCTGCTTTCTGAAGACAGATTCTCTCCCCAGACAGCCTGAAAGGTTTTATTGCCTGTCTGTGTGCTACTGTGAGGGAAATCTGAAGGCACAGATCAAAGGACAGCAATAGACTTGAATCAGTGACTAACATTCTCAGTTGACTCATAATGAATGTCAAGGAAACCCATTGTTGTTAGTGGACAAATGTcgagaaaatgtataattgtttcggattgcatttctttattttttttttaaccagatgAGTTTGGAAATTAAGAATTGCTTGaagaaaacaggagagagagggagagtatGGGGATCTCCTAACTTTCCTCCCACATTTGTCTTTGCCTTTTATTGATCATTGCTAGGTACAGCAGAAATCAAAAGCCATGAGCAAAAGGCTAAATTTTGTGATGGTGTTTATGGTCTTTATGCttacagttttagtttttagatTGCAATTTTTGATCATGACCAGTTTAGTTCTTTAAGATGTTTAAGATAAGATGTTATACCCAATTATGTGGTCAGGTTTTTTCTTTGGCCCAAATGTGACGAAAGACAAATGAGTTGCTCCTTGTCTCACTGTGCGGTCCATGTTTGGCCTGGACTGGAAACATCCATCAGTTTACAGTTTTTGGTTGGCACctgtgatttaataataaaaaatgaaataaatactataattaagcaaattaagcAAAGTCTGatccaatatatttatttggcatGAAAGCTATTTTGTGAAGTAAAAAAGAAGCTAAGCTTGACTTGGATTGGTAATAAAATCTACAGGAAGTCTTGAAAATGATTTCCTTTTTGtctgaattaataatttgcatttttcatccTATTGTGCAAGTGTCCTTGTAAAAAGTAATCAAAACTTATATCCTATTAAACCACATTTCAGTTTAGTTATTGTGGAATGACATGTAAAGTTTCCCTTGAATACCACAAAAAGTAGACAACATTGAAATTGTAGctatttttatttgctgtacacaaatgcatttcattgaaCAATAGAACAGTAACATGTataatgttatttgtttctgttagCCACAACCctaatatttacacaatacactatttttgtatacaatgtataatgCTTGAACTtcagaacaatacaaaaataaaatacacttggAGAAATTTAGACCCAGAGATTGATTAAAATCTCATGCAGTTCATCCAGTAGAAGTAGATGGTTGGTGCAATAGCAGAAATCTAAGCTATTATAGAGAATAGTCtaagtaaaaatgttttggagtCTCTCTAACCTAAACCTGCTTGCAACACAGAAAAGTCAAAGTAAACGAGTAACACAAAGCAGGCAAGTGAGTTAATTTATTCAGGCTAAGCTGCCCTAATCATGCCaaattaaatctattaaaatgtgaGCTTCATGCTAACAGTTCCATCACTTTATCTTTAGTTAACCCAGCTCCTGCAGCGTCCAGTGCTACAAAATGATACAAATCAAAAAGTGAAGGTTTAACAAAGCATAACCTTTATTTTGTCTTCAGGATAATATATCTTAAAACCTGTCTTTGGCCATTTATAAATGGCTAAAATCTTTGAACTGCCCACACCAGAATCATTTCTAATGTATGGTTTTGACCGGAACACAACATTTACGgtttactgtatataatgtctcttgtgttttaagaaaataacatcCATTATATACAACTGTGAGTATTGAGATTCTGTCCTTTACATGAAACCAGTCTGACTTGCTAGTAGGACAAATGAGTAAATTGCAGctccagaaaaaaacaaaaaaaaaacaaaacacttaatggATGTGTGTGAACTTGAAGCAAACACTTAAGAAACAAATAGGCCAGTAAAAGGTCTGTTACTTATACTTGTTGTCCTGTTGAAGtgaacatttcagtttattctcTTGGTTTAATTGTGTAACAGgtaattgaaaattaaatgcaacaatTGAACAACAAACATGGTCACTTTCTGTCTTcagcaaaacattattaatattatgcttAATCTTCTATTGGGGACTTATGTAAAACCTTACAGGTGAAAATGCAGATCAAAACCATCCAAAAACCATCCTGCTTTACACATAGGACAGCACTTATATTTTTACAGGCATATAATTAGTACAACCTCCAATATCCCATTCATAATGACTTAACGATGCTTTAGTAGGGAATGTTTGTCTATTAAGGACAGTTTTGAAATATCTGTTCTTATAATAGGGTAGCAATCCAGCTACAGCAACATAGCACTGCCTCTTATTACACCATAAAAGACGGATTACCAGTGAAAGTGATCGTAGAGAAAAATCCCAATCAGGCACGATTGTATCATATGCAGGTTTCCTGACACATAaaggaataaatatatttaaaatatatcatgttcatattcatAAGTCTAGCtgcaaagtgtgttttttttgtttattcctgAAACAATACACCCCAGAGATGGAAATATATAGAATgcactgttgtttattttatatattttctctctgtgttttttataaCCTAGAACCTGATCTCTGGGCACTGTCAATATTAAAGAAGATTGGTTTAATTATTGATCAACGAAGATGGGATtgacattcatattattttctatttttatggaTTAGACTTTGATCTGCCAGTTTTTGCATAAAGTGGTTTGATATGATTTTTGCAGATAGGAAGCACTGtggatgttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49135 lncRNA downstream 170859 6060990 ~ 6063817 (-) True AMCG00012732
TU49079 lncRNA downstream 339562 5816472 ~ 5895114 (-) True G39377
TU49078 lncRNA downstream 339562 5818186 ~ 5895114 (-) False G39377
TU49068 lncRNA downstream 422640 5778290 ~ 5812036 (-) True G39371
TU48984 lncRNA downstream 688607 5545834 ~ 5546069 (-) True G39295
TU49166 lncRNA upstream 28816 6268235 ~ 6268938 (-) True G39443
TU49191 lncRNA upstream 46036 6285455 ~ 6287935 (-) True G39462
TU49269 lncRNA upstream 399088 6638507 ~ 6695924 (-) False AMCG00012751
TU49302 lncRNA upstream 533549 6772968 ~ 6847396 (-) True G39546
TU49313 lncRNA upstream 547037 6786456 ~ 6795733 (-) True G39556
AMCG00012731 mRNA downstream 147850 6071923 ~ 6086826 (-) True AMCG00012731
AMCG00012732 mRNA downstream 171071 6052364 ~ 6063605 (-) False AMCG00012732
AMCG00012730 mRNA downstream 237564 5990103 ~ 5997112 (-) True AMCG00012730
AMCG00012715 mRNA downstream 403162 5830618 ~ 5831514 (-) True AMCG00012715
AMCG00012716 mRNA downstream 429283 5792038 ~ 5805393 (-) True AMCG00012716
AMCG00012736 mRNA upstream 17411 6256830 ~ 6257924 (-) True AMCG00012736
AMCG00012742 mRNA upstream 50212 6289631 ~ 6327075 (-) True AMCG00012742
AMCG00012743 mRNA upstream 123030 6362449 ~ 6378254 (-) True AMCG00012743
AMCG00012744 mRNA upstream 173312 6412731 ~ 6435631 (-) True AMCG00012744
AMCG00012745 mRNA upstream 212590 6452009 ~ 6460026 (-) True AMCG00012745
TU47984 other downstream 4050513 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 4457455 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 5695085 523747 ~ 539591 (-) True AMCG00012628
TU49217 other upstream 216302 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 2873022 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 6000977 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 6875474 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 11640806 17880225 ~ 17899426 (-) False AMCG00013038

Expression Profile