RNA id: AMCG00012736


Basic Information

Item Value
RNA id AMCG00012736
length 1095
RNA type mRNA
GC content 0.57
exon number 1
gene id AMCG00012736
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 6256830 ~ 6257924 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTTTAAAAAGCATTGTGTGGCACGTGGCTCCTCTGACTTGCCTCCTGCTCCACGAGGCCCTGTGCCTGGCCCTACAGACTGATCCGGGGCTGCGACACCGTTCAGCTTTCTCCGCCGCACGGACGAGCAGCATGGTGGGTGGCCAGCACATGGCAGTGACCTTCGAGAAGCTGCTGGTCAACATCGGGGGCGACTTCAACCCGGACACGGGGAGGTTTCGCTGCCGAGTGCCCGGCGTCTACTACTTCTCCTTCACTGTGGGGAAATATCCCAAGAAGTTGCTGTCGGTCATGCTGATAAAGAACGGGCGGGAGGTGCAGGCCATTGTGTACGACGAGCACCGGCACAAGAACCGCAAAGTGCAGAGCCAGAGCATCATGCTCAGCCTGCAGCCCTCGGACACCATCTGGCTCCTGCTGCATGACAACCCCAAGTATGCCTTGTATAGCAACATAGGGCCCTACACTACCTTCACCGGCTACCTAGTCTACCCAGACCCGACCTTAATAAACAACTATGTGGGTCCCCAATCCCCTGTTCCATATCACCCAGCATGCCAATCCCAGGGGGCAGCAGATTCCAAGAACACTGTGCCATCAAGGACGTGGGCAGGGGGGCAGGAGCAGCAGCTGCCTCGCTCGGCTTTCTCAGTGGCTAGGAGTCACCCTCTCATGGGAGCGGGGGACTCGGGCAGGGAGGAGAAGAGAGCGCTTAGCTTTGACGTGGAGTACGTCAATCTCGGGCGAAACTTCAACAAGACCTCGGGCCACTTCACCTGCCGCTACCCTGGTGCCTACTTCTTCACCTTCACCGTGGGAAAACACCCTCTGAAGGCCCTATCTGTGAAGCTCATGAAGAACGCTGGTGATGTTCAGGCTATGATCTTCGACGAGGACGACTCTATGCACAGGGAGATGCAGACGCAGAGCCTGATGCTGGCTCTTCAGGAAGGCGATACGGTGTGGTTATACAGTCAGCAGCATGAGCGATTTGCCGTCTACAGCAATCAGGGCAGGTACATCACCTTCACAGGGTTCCTAGTCTACCCTGAGCTCAGCACACATGAGCATCTGACCAGGACTCAATTTTAG

Function

GO: NA

KEGG:

id description
K24237 C1QTNF4; complement C1q and tumor necrosis factor-related protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49135 lncRNA downstream 193013 6060990 ~ 6063817 (-) True AMCG00012732
TU49079 lncRNA downstream 361716 5816472 ~ 5895114 (-) True G39377
TU49078 lncRNA downstream 361716 5818186 ~ 5895114 (-) False G39377
TU49068 lncRNA downstream 444794 5778290 ~ 5812036 (-) True G39371
TU48984 lncRNA downstream 710761 5545834 ~ 5546069 (-) True G39295
TU49166 lncRNA upstream 10311 6268235 ~ 6268938 (-) True G39443
TU49191 lncRNA upstream 27531 6285455 ~ 6287935 (-) True G39462
TU49269 lncRNA upstream 380583 6638507 ~ 6695924 (-) False AMCG00012751
TU49302 lncRNA upstream 515044 6772968 ~ 6847396 (-) True G39546
TU49313 lncRNA upstream 528532 6786456 ~ 6795733 (-) True G39556
AMCG00012735 mRNA downstream 17411 6234676 ~ 6239419 (-) True AMCG00012735
AMCG00012731 mRNA downstream 170004 6071923 ~ 6086826 (-) True AMCG00012731
AMCG00012732 mRNA downstream 193225 6052364 ~ 6063605 (-) False AMCG00012732
AMCG00012730 mRNA downstream 259718 5990103 ~ 5997112 (-) True AMCG00012730
AMCG00012715 mRNA downstream 425316 5830618 ~ 5831514 (-) True AMCG00012715
AMCG00012742 mRNA upstream 31707 6289631 ~ 6327075 (-) True AMCG00012742
AMCG00012743 mRNA upstream 104525 6362449 ~ 6378254 (-) True AMCG00012743
AMCG00012744 mRNA upstream 154807 6412731 ~ 6435631 (-) True AMCG00012744
AMCG00012745 mRNA upstream 194085 6452009 ~ 6460026 (-) True AMCG00012745
AMCG00012752 mRNA upstream 349270 6607194 ~ 6619758 (-) True AMCG00012752
TU47984 other downstream 4072667 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 4479609 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 5717239 523747 ~ 539591 (-) True AMCG00012628
TU49217 other upstream 197797 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 2854517 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 5982472 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 6856969 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 11622301 17880225 ~ 17899426 (-) False AMCG00013038

Expression Profile