RNA id: AMCG00012737


Basic Information

Item Value
RNA id AMCG00012737
length 915
RNA type mRNA
GC content 0.60
exon number 2
gene id AMCG00012737
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 6100581 ~ 6101610 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAAGGAGGGGTAAGACAGTTGTGAGGACCCTGGAGGATTTAACCCTTGATTCTGGCTATGGTGGAGCTGCGGATTCCTTCAGGTCGTCCAGCTTGTCCTTGTGTTGTTCAGACACGCACTTACCTTATGCCCATGGAGGAAACTGTTGGCATCTAACCGACTCCATGCATAGTCGCCACAACAGCCTGGACACTGTCAACACCGTGCTGGCGGAAGACACCGAGATCCTGGAGTGCTCCGGCCAGTGCGCCAAGCTTCCCGAGCTGGAGGATGTGCCCTGGAGCCTCGGCGAGGTGGAAAACGCCCTCAAGAAGGAGGAAGGGGTGAGTGTGGGGCAGCTGTCCAAGGAGATCCTGGCCAAGCTGTCCTCGCTGGTGAGTAGAGCGCTGGTGCGGATCGCCAAGGAAGCCCAGAGGCTCAGTTTGCGCTATGCCAAATGCACCAAGTATGAAGTCCAGAGCGCCATCAAGGTGGTCCTCTCCTGGACGCTGTCGGTCAACTGCATCACCGCGGCTCTCAGCGCCCTGTCGCTCTACAACATGAGCACGGGGGACAAGTTCAGCCGCGGCAAGTCGGCCAGGTGCGGGCTCATCTTCTCCGTGGGCAAGTTCTTCAGGTGGATGGTGGACAGCAGAGTGGCCGTGCGCATCCACGAGCACGCCGCCATCTACCTGAGCGCCTGCATGGAGAGCCTGTTCCGCGAGGTGTACACGCGGGTGCTGCACAGCGCGCACGTCGAGAAGGAGAACGGGCTGCCCAAGTTCACGGCCGAGTGTCTGGAGCAGGCGATCAACAACGACTCGGAGCTGTGGGGGCTGCTGCAGCCGTATCAGCATCTGATCTGTGGGAAAAACGCCAGTGGCAGTGCACATCGACCCGTTTTGCATATACAGCCTGCTGTGCTGTTCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49104 lncRNA upstream 44009 6053148 ~ 6056572 (+) True AMCG00012734
TU49089 lncRNA upstream 177558 5922614 ~ 5923023 (+) True G39382
TU49015 lncRNA upstream 452474 5647774 ~ 5648107 (+) True G39321
TU48966 lncRNA upstream 663419 5436833 ~ 5437162 (+) True G39279
TU48836 lncRNA upstream 1026455 5037547 ~ 5074126 (+) True G39193
TU49169 lncRNA downstream 183324 6284934 ~ 6287936 (+) True G39445
TU49225 lncRNA downstream 411038 6512648 ~ 6536393 (+) True G39490
TU49284 lncRNA downstream 660355 6761965 ~ 6762278 (+) True G39538
TU49318 lncRNA downstream 796387 6897997 ~ 6898230 (+) True G39560
TU49358 lncRNA downstream 1112135 7213745 ~ 7218459 (+) True G39586
AMCG00012734 mRNA upstream 43749 6053242 ~ 6056832 (+) False AMCG00012734
AMCG00012729 mRNA upstream 60991 6032753 ~ 6039590 (+) True AMCG00012729
AMCG00012718 mRNA upstream 277066 5807857 ~ 5823515 (+) True AMCG00012718
AMCG00012720 mRNA upstream 309096 5767206 ~ 5791485 (+) True AMCG00012720
AMCG00012721 mRNA upstream 337434 5731990 ~ 5763147 (+) True AMCG00012721
AMCG00012741 mRNA downstream 91650 6193260 ~ 6231290 (+) True AMCG00012741
AMCG00012740 mRNA downstream 142297 6243907 ~ 6264794 (+) True AMCG00012740
AMCG00012738 mRNA downstream 164132 6265742 ~ 6269443 (+) True AMCG00012738
AMCG00012739 mRNA downstream 178690 6280300 ~ 6282779 (+) True AMCG00012739
AMCG00012750 mRNA downstream 282195 6383805 ~ 6412746 (+) True AMCG00012750
TU49057 other upstream 277261 5807846 ~ 5823320 (+) False AMCG00012718
TU48986 other upstream 547814 5552417 ~ 5552767 (+) True G39297
TU48550 other upstream 1727007 4370313 ~ 4373574 (+) True G38954
TU47823 other upstream 5275873 820524 ~ 824708 (+) False AMCG00012639
TU49223 other downstream 415798 6517408 ~ 6517921 (+) False AMCG00012748
TU49477 other downstream 1623878 7725488 ~ 7727828 (+) True G39670
TU49527 other downstream 1733736 7835346 ~ 7836214 (+) True G39709
TU49939 other downstream 3010850 9112460 ~ 9113101 (+) False AMCG00012820
TU50138 other downstream 4335297 10436907 ~ 10444447 (+) True G40224

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00026321 True 3129 mRNA 0.55 19 NC_007129.7 14956165 ~ 15104858 (-)