RNA id: AMCG00012743


Basic Information

Item Value
RNA id AMCG00012743
length 990
RNA type mRNA
GC content 0.54
exon number 6
gene id AMCG00012743
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 6362449 ~ 6378254 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCTGCTCTGCTCTGAGACCAACACTTATGAAGTGCTGGGGCTCCTGGGACATGGCAGCTTTGGCTGTGGGGCTGAAATTCTTGAAGTGGGGCACCAATGAGATTTTGGCTATCAAGGTTCAGAAGAAATCCTCTGACTATGACTGGCAGGGCCAGGTTGAAGTCAGCATCCTGGACAGGCTGAAAACAGAGAACATTAACGACTACAACATTGTCCGGGCTATCGAATGGTTCCAGCACAAGGGCCACAAGTGCATGAACCTGCAAAACTTCATCAACCACAGGCCACTGACACTTGAGCTCATCTGGCCCATCCTGCAGCAGTTAGCCACTGCCTTGATGAAACTGAAGAGCTTGGGGATCATCCATGCCAACCTCAAGCTTGACAACATTGTGCTGGTGGACCAGGACAGACAGCCATACAGAGTCAAGCTGATTGACTTTGGCATGGCCCGCCACCCTTCAAAAGCAGGTAGCTCTGCCTTCTTTCAGACCAAAATCTACAGGGCTCCAAAAATTTTGCTTTGCCTGCCCTACTCAGAAGTTATTGATATGTGGTCTCTGGGCTGTATCATTGCAGATATGTTTTTGGGGGATCCTCTGTTCACTGGGGCAACAAAGCATGATTCAAACAGCCTGTGGCCCGCTCTCAACAGCGGGGTCGTCAGTAGTTGCAGTGGCAGCTCCAGGGGGAACAGGGGCATCCGGATTCTGAAAAAGGGCTGAGGATTAAGGTTTGCAGGTGTGGGGTCCCCCTTGTCTGCGTGGAACACAGCTCTGATCCGTGGGATTGTGGGCGTTTGCCAGCAGCTTGACCGGAGGGAGTCACACAGACACGTCTGCCATGCATCTCCACCGAGGAGAAAGAGGAAGTGCTCTGACACAGAGGAGTCTGGCGGTCCCAGTGCAGCCCAGCAGACCGTAGTGCCCCCAGCCTGGCAGCGTACAGGAGTAGCGGCCCACTCCCAGCAGCTTGACCAGAGGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49191 lncRNA downstream 74514 6285455 ~ 6287935 (-) True G39462
TU49166 lncRNA downstream 93511 6268235 ~ 6268938 (-) True G39443
TU49135 lncRNA downstream 298632 6060990 ~ 6063817 (-) True AMCG00012732
TU49079 lncRNA downstream 467335 5816472 ~ 5895114 (-) True G39377
TU49269 lncRNA upstream 260253 6638507 ~ 6695924 (-) False AMCG00012751
TU49302 lncRNA upstream 394714 6772968 ~ 6847396 (-) True G39546
TU49313 lncRNA upstream 408202 6786456 ~ 6795733 (-) True G39556
TU49319 lncRNA upstream 519733 6897987 ~ 6898237 (-) True G39561
TU49351 lncRNA upstream 772363 7150617 ~ 7150823 (-) True G39580
AMCG00012742 mRNA downstream 35374 6289631 ~ 6327075 (-) True AMCG00012742
AMCG00012736 mRNA downstream 104525 6256830 ~ 6257924 (-) True AMCG00012736
AMCG00012735 mRNA downstream 123030 6234676 ~ 6239419 (-) True AMCG00012735
AMCG00012731 mRNA downstream 275623 6071923 ~ 6086826 (-) True AMCG00012731
AMCG00012732 mRNA downstream 298844 6052364 ~ 6063605 (-) False AMCG00012732
AMCG00012744 mRNA upstream 34477 6412731 ~ 6435631 (-) True AMCG00012744
AMCG00012745 mRNA upstream 73755 6452009 ~ 6460026 (-) True AMCG00012745
AMCG00012752 mRNA upstream 228940 6607194 ~ 6619758 (-) True AMCG00012752
AMCG00012751 mRNA upstream 260226 6638480 ~ 6650822 (-) True AMCG00012751
AMCG00012757 mRNA upstream 437554 6815808 ~ 6823765 (-) True AMCG00012757
TU47984 other downstream 4178286 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 4585228 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 5822858 523747 ~ 539591 (-) True AMCG00012628
TU49217 other upstream 77467 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 2734187 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 5862142 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 6736639 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 11501971 17880225 ~ 17899426 (-) False AMCG00013038

Expression Profile