RNA id: AMCG00012749


Basic Information

Item Value
RNA id AMCG00012749
length 2917
RNA type mRNA
GC content 0.49
exon number 17
gene id AMCG00012749
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 6438043 ~ 6453810 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGTAATCGGGGACGGACCAGAATGCTGTCTGGGGATGTTTTCCCCTGAGTTAAGatgcaataaaacatgattaaaatatattcttaatccgacagaatattaaaattacagcaTAGTTTCGTGGAATCATATGTCTGAAAATGACACTCGCAAGAAAAACTGGCTAAAAAGGAGAGAAATACTGCTGATGGTTGTCCTGGACTGGAGCTTCTCTGATGATGATAAATATTCTGTTCGTTTCCTAACACATCGGTCGTTTTTAAACCCAGACGTGTTGGTCTTTGGATTTGGTCGATCGATAAGacttactgttttattttgctgaagATGAAGACTTTTTCGGCATCTCACAAGACTGTGTTTGTGGTGGACCACTGCCCCTATATGGCCGAGTCATGCAGGCAGCAGGTGGAGTTCGACATGCTGACAAAGAACCGTTCACAGGGCATTATCCCCTTGGCCCCTGTCTCCAAATCCCTGTGGACCTGCGCGGTGGAGTGCTCTCTGGAATACTGCAGAATACTGTTCGATATCTACCCCACCAAGAAACTGGTGAATTACATTGTAAGTGACTCAGAGTTCCATATTCTGAACACCTGGAACCAGGAAGACCAGAATATACATGAGcTCATGTCAGCGCTGGCAGCTGTGGGGCCACCTAACCCCCGTGAGGACCCCGAGTGCTGCAGTATTCTGCACGGCCTGGTGCTAGCAGTAGAGGCACTGTGTAAGATCACAGAGTACCAGCACGAGGCTCGCACGTCCATGATGGACATGGCCGAGAGAGTCTGCAACCGCGGCCGGATCATCTGCATCACTAATGCTAAGAGTGACACCCATGTGCGAATGCTGGAGGACTGTGTACAGGAGACGatacaagagcaaaacaaactgGCCGCGGGGTCAGATAGGTTGATGCAGATCCAGCAGTGTGAGCTGGTCCTGATTCACACCTATCCCTCAGGGGACGACACTCTGGTCTCCGATCGTCCCAGGAAAGAGATTTCTCCCGTGTTGACCAGCGAAGTGCACAGTGTGCGCGCAGGACGGCACCTGGCCTCCAAGTTGAACATCCTGGTACAGCAGCACTTTGACCTGGcctccaccaccatcaccaaCATCCCCATGAAGGAAGAACAGCATGCAAACACATCTGCTAATTATGATGTTGAGTTACTTCACCACAAAGATGCACATTTGGAATTCATAAAGAGTGGGGATTTGCACCCTCCAGGCAGCAACAGTCGAGACAGCAGTCTCAAAGAAACTGTGACCTTAAAGTGGTGTACCCCACGCACCAACAGCGTGGagcTGCATTTTTGTACTGGGGCCTACCGGATTTCACCTGTGGATGTCAACAGCCGACCGTCCTCTTGTCTAACTAACTTTCTCTTGAATGGTCGGTCAGTGCTATTGGAGCAGCCGCGCAAGTCTGGCTCCAAAGTGATCAGTCACATGCTGAGCAGTCACGGGGGCGAGATCTTCCTCCATGTCCTGAGCAGCACCCGCTCCACTCTGGAGGACCCCCCCTCCATCAGCGAGGGCTGTGGGGGCCGGGTCACAGACTACAGGATCACCGACTTCGGAGAATTCATGAGGGAGAACCGCTTGACCCCTTTCCCCGAAACCGCCGAAAGTGCAGATGTGCTTGAGGGACTGCCCATTGAGAGGGCCAAAAACCAGCTGGAGAGGCACACACGCTACTGGCCTATGATCATCTCTCAGACCACGATCTTTAACATGCAGGCTGTGGTGCCCTTGGCTAATTTGATAGTAAAGGAGAGTTTGACAGAGGAAGACGTGCTTACTTGTCAAAAGACCATTTACAATTTGGTGGACATGGAGAGGAAGAATGACCCCCTTCCCATCTCAACCGTGGGCACGAGAGGAAAGGGACCCAAAAgAGACGAGCAGTACCGCATCATGTGGAACGAGCTGGAGACACTTGTGAGGACCCACGTGGGCAGCACGGACCGCCACCAGCGCGTCCTGGAGTGCATCGTTGCTTGTCGCAGCAAACCCCCCGAGGAAGAGGAGCGCAAGAAgcgagggaggaagagggaggataAGGAGGACAAATCCGAAAAGAACGGAAAGGACCTGGAGGCCGAGAAGAGCTGGCAAGAATCTGAAAGGTTAAAAGGGGTGCAGGACCGTGAGAAGGAGGAGCTGGCCGAAGCAGAAGTCATCAAGGACTCCCCCGACTCTCCTGAGCCACTCAACAAAAAACCCCGTCTGGTGGTGGAGGAAATCCAGCCAGTCGAAAAAGCCAAAGGTCCTGTCTCTTTGCTAACAATGTGGACCAACAGGATAAATGCTGCCAATTCCAGGAAGCACCAAGAGTTTGCTGGACGATTAAGCTCTGTAAACAACAAAGCTGAATTATACCAACATctcaaagaagaaaatggGATGGACACACACGAAAATGGGAAATCCTCGAGATAGTGACTTGTTACACGAGGAACACAGGATTAACTTTTATTATCCAAGACTCGCTACTTGAAACAGCCATCATACAGTTACACAGGACACAATTTTTAACCGAAATGACAATAATCCATTCACAGAGCCGGACTGGACTCCTCTCTCCCATcgctttttaatgtttatagaCTATATACAGATACGAGTTGTACCGTCTCCATCAAATTAAATCTTTGGCTTTTGTTTTCGATTTCAGAAAGACCCTTTTTTCcatgtctttctttttacataaagtgtgtttataaaaatgcttttggaGGTTTTTgacacaaaagaagaaaaaattaaataaacaatgtcaGTGGTTCCTTTGTTCCTGTTCATTTATCTCTTTACTATGCAGCACAATACAAGCCTCTCATATATCCCCTTACCTGGCAGTGGGCTGAGAGTACACAATGCTCTttaatttttgcatttttagtCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49169 lncRNA upstream 150107 6284934 ~ 6287936 (+) True G39445
TU49104 lncRNA upstream 381471 6053148 ~ 6056572 (+) True AMCG00012734
TU49089 lncRNA upstream 515020 5922614 ~ 5923023 (+) True G39382
TU49015 lncRNA upstream 789936 5647774 ~ 5648107 (+) True G39321
TU48966 lncRNA upstream 1000881 5436833 ~ 5437162 (+) True G39279
TU49225 lncRNA downstream 58838 6512648 ~ 6536393 (+) True G39490
TU49284 lncRNA downstream 308155 6761965 ~ 6762278 (+) True G39538
TU49318 lncRNA downstream 444187 6897997 ~ 6898230 (+) True G39560
TU49358 lncRNA downstream 759935 7213745 ~ 7218459 (+) True G39586
TU49424 lncRNA downstream 907010 7360820 ~ 7362361 (+) False AMCG00012763
AMCG00012750 mRNA upstream 25297 6383805 ~ 6412746 (+) True AMCG00012750
AMCG00012739 mRNA upstream 155264 6280300 ~ 6282779 (+) True AMCG00012739
AMCG00012738 mRNA upstream 168600 6265742 ~ 6269443 (+) True AMCG00012738
AMCG00012740 mRNA upstream 173249 6243907 ~ 6264794 (+) True AMCG00012740
AMCG00012741 mRNA upstream 206753 6193260 ~ 6231290 (+) True AMCG00012741
AMCG00012748 mRNA downstream 22439 6476249 ~ 6517983 (+) True AMCG00012748
AMCG00012747 mRNA downstream 91422 6545232 ~ 6579959 (+) True AMCG00012747
AMCG00012746 mRNA downstream 172184 6625994 ~ 6627816 (+) True AMCG00012746
AMCG00012753 mRNA downstream 189535 6643345 ~ 6759575 (+) True AMCG00012753
AMCG00012754 mRNA downstream 311269 6765079 ~ 6780818 (+) True AMCG00012754
TU49057 other upstream 614723 5807846 ~ 5823320 (+) False AMCG00012718
TU48986 other upstream 885276 5552417 ~ 5552767 (+) True G39297
TU48550 other upstream 2064469 4370313 ~ 4373574 (+) True G38954
TU47823 other upstream 5613335 820524 ~ 824708 (+) False AMCG00012639
TU49223 other downstream 63598 6517408 ~ 6517921 (+) False AMCG00012748
TU49477 other downstream 1271678 7725488 ~ 7727828 (+) True G39670
TU49527 other downstream 1381536 7835346 ~ 7836214 (+) True G39709
TU49939 other downstream 2658650 9112460 ~ 9113101 (+) False AMCG00012820
TU50138 other downstream 3983097 10436907 ~ 10444447 (+) True G40224

Expression Profile