RNA id: AMCG00012751



Basic Information


Item Value
RNA id AMCG00012751
length 4910
RNA type mRNA
GC content 0.42
exon number 4
gene id AMCG00012751
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 6638480 ~ 6695924 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


aggaTGGTGGCGAAACGGCAGCTCCTTCTCTCCTCTAGCAAGGTGGAATGACATTGTGTTGCCCCTGTGCTCATCTAATGATCCATCATGGAGTTGAAAGTCTGGGTAGATGGGGTCCAGAGAATCGTTTGTGGAGTCACAGAATCAACAACCTGCCAAGAAGTGGTGATTGCTCTTGCCCAGGCTATAGGTCGTACTGGAAGGTACACACTGATCGAGAAATGGAGGGAAACTGAGAGGCACCTTGCTCCGCATGAGAACCCCATCATCTCCCTGAATAAATGGGGGCAGTACGCCAGCGACGTGCAGCTGATCCTGAAGAGGACAGGGCCGTCGCTCAGCGAGAGGCCCACCTCTGACAGCATGGCCCGTATCCCGGAGAGGACTTTGTACCGGCAGAGCCTCCCACCCCTGGCCAAGCTAAGGACCCAAAATGACAAACTGCTGAAGCGCAAGGAGCCCAAGAGAAAATCGTTGACTTTCACGGGAGGAGCAAAGGGACTGATGGACATCTTCGGGAAAAGCAAGGAGACGGAGGCCAAGCAGAAGGTGCTGAACAACAACCTGCCCCGGCCGGGCACTGAGGAACTGAGCAGGCTGGTGCAGCTGCAGAAGGAGAAGTTACAAGTGTTGGAGAGGAGGTTGGAGAGCCACGAGGCCGAGCTGCTCTTCTGGGCTGAGAAGAAGAATGCCAGCGGCAAcggcctggaggaggagataATGCGGCTCGAGCAGCGGGTGAAGAAGAACGAAGTGGAGATTGAGGAAGAGGAGTTCTGGGAGAACGAGCTGCAGATCGAGCAGGAGAACGAGAAGCAGCTGAAGGAGCAGCTGCAGGACATGAGGCACCGAATCCAGCAGTGCGAGGACAAGCTGGCCGAGTACCGGGCCAAGATCCACAGCATCGAGGCAGGCATCGAGGCCGAGAAGATCCAGCAGGAGATGCAAGAGACGCAGCAAGTCAacgaggaggagatgaagatgaagatccTCAAAGTAAAGGGAGAGCTGGATATCCAGTCCCAGCACACAGCCAGGCTGGAGACGAGCTGCCGAGCGGTGGAGAGATCTCTCGGACAGGCCAGCAAAAGACTACAGGAGAAGGAGCAGCAACTCGAACAGCTCACGAAGGAGCTGAGGCAAGTGAACCTGCAGCAGTTCATCCAGCAGACTGGCACCAAGGTCACTGTGCTGCCAGCGGAGCCCTGTGAAGAGGACTCGGACCAGGTGGACTTGGGGAAAGAGTCTGCTGCCCAGTCATGCCTGATGAAACGGCCGGGTTCCTCGCGACAGTTACCGAGCAATCTGCGCATCCTACAAAACCCACTCTCCTCTGGATTCAACCCAGAGGGCAtctatgtttaaattattatacacaCCTccattgttgttgtgtgtgtgtgtgtgttttgggggaggggggtagtCAAAGGCATCACATAACTCTTTCAGAGCTGCATGACTTTCGCTAGTGTGTTGCTGAGAGTTGTGGCACACTCTGTGGTGAAGCTGGGTCGGTGTGTGAGCGACTGTGTGGTGTAGAAGCAGGGTTTGCGTATTGACTTACGGTGACTCCAATTTCAGCACTCGATAGTCAAACACGGGGACGTGCGGAACATAGGTTGGCCAGCTTTTGGGACGTCTTTTCAGTCTGATTTGAGTTGAGCATGCCAAGTACATTTCTGAATAATGAATGAAAGGCAGATAGGAAGCAATTTGACAAAAACTGACTCCTggtgttgtcagtagtttaaaATCAAGATGGCAAACATCTTATTAACTGATCCTGTGTCAGGCAACAGATGGCACTCCTGAACCAAGCGTTAAAGAGCCTTGgaacacacattttctgttgtttttataatggCTATTCTTGATATTGTTAATTTGCTGGTACCTAaatctgtaaatgtatacaaattaagAAGCCTTATTTGCCTCTCATCCTTGAGGTTTACCTGGAATAGAATGGGCTGTTGAATGAAACCCCATATTGTCACTGTAGCTGCTGAAGCACACAGTTCCCATTTTCTTTGAATGAATTACTTGTACGTGTAGATTAAGGCTTGGAACACCACTATGAAATTTCAGATTGAATTACTGTTTACTGTTCCAGAGGCCACATACAGTGAGACTGTCCATCACAGCCCTGCTGTAATGAGAGCTGAAGACGTCCCTGTCCTGTTTGCTGTTCAGATGTACAATGCAGGATTTAATTGTACTGACTACCACAGTCATTGAGATGCAGTCTTACCACTCCATGTTCCACTCAAACCTTGGTGGCTATAATCCACACTGCACATTTGCTGTTTGTGAATTtcggtgtgagtgtgtgtgtgtatagactGGATTTGAATAGTTGATTATAGTTAAGGAGGATTGTACTGTGGTAGTGAGGTGGATAACATAATTGTTTCATTAGCCATGCAGGGAAAGGGTAACAGGTACATAGAAGCTGTGTAGACTTATTTTTATGGACTGTAAACTActacttttaaattaacatttaaactatATAGCAATAAAGCAGGTTTGCTGCTGAGAACACACACTTTTCCCTTTAGTTTagtagcattttctttttctgtaacGGTTTACTCGCTTGTACATTGACATAAAAACTAGCCATCTTGGAGAAGCACATATGTAAGTAACCATACCTGTAAGTTGTCTCCTGCACTTTATAATGTCTCTTTGGATGGAAGGACAAGTTGTACAAAGGTGTTCTTGATGAatcgcacacatacacaaacacatacatacatacacacacatgtacttAAAGTCCTTTGGTTTTACAcaggtgttgtttttattgtccaATTATTTCATAAacagtttgttgttttctacttttcttaaatgaatttattttcaaataaatctcTTAATCAAAGGAAGTATAGTTCATCCTTCTCAATACACTTCAGTGGAAGAACGTTCTTCATCCTTAGCTACAGTGATGCAAAAAGGTTGTCGTAGACGTGTCCTGATACCAAGTGGGAGGATCTTCTGCTTATTTGTTTCCTGCCCCATTCATAACGGAGTTATTTCGCAGACGTGGTTTGAGTCAACTGTGGCAAACACTGCATCCCAGGGCAAAGACTTTATAGGTGTTCTCTAAGCTCACCTTAGTACAATCTTTTTCTTAGCCAGTGttactttttgtattatattatttttttaatacacaaaaagAGTTATAAATGCTGGAAGTCTGTACGATTCACAGATTTCACCTTAAAGCATACATGTAAATTAACAGGAGTTATGTAGCCAATTAGGATTTGCAAGGTGGGCTTCAGATTGTAGTTCTGTACAAGTTATCAAACTCTGTTAGTCAGATATACTGGCAGCatctggaaataaaaaacattttttaccatatattgatcatatatataaataagactTAACTCAtgcatgaataaattaatagttACAGTTTCAAAGACCCTGGTAAGCACAAGTAAATGAGAGACGAGTGACTAAGTGACGGAGATTGTAGGCCTATTTTCTAGTCTGTAGTGTTGAAGCTGAATGGGATTGCTGAAATGTAGGGGTATCCCTGCGATTATATGATAAAGATAAGtaagtctgtgttttgtttcagaagaatttatttttgataattcagtatttgcatttctttgcaGAGACGTGGGATTTCTAAGAGGAAAGGTGCCTAGTCTTTTGCACAGTCAGCCAATGTGGTCTTAAAAGGGCGTAATGTTTGAACCTAGTACTTCTCCGGTCAGTGTGTGGTACTCCTTGCTAATCAGTGAGTTAGTGTTTTCTCAATTAGTGTTCATCAGGGTCTTTGAAAGAAATCAATAGACTTTTTGagtcttattattttgtattataataataataataataataataatatgtatttgagGCATGAAGGAAAACATCTTTGTATTTATGAAGaacaaagcaaatgttttgtttagtcttttttttttttggacaagGCAACAGGAAGCATGCCTTATTCAATAAAGAGTGTAAATAATGACAGAAAAGtgttcaataaatatttttgaagaTGTGTAAAATAGTACATAACACTGTACAGCTAgtgtaactttttttattattattatgccacATTGAACTTTTGTTTTGAAGGGACACTTGCTTGATGCTTGTGTTTTGGACGGAAGGCACTGGTTGTATGAACTTGTTGAAACCGTGAGTCTGTAAATGTACTCCTTTAGTGCTGCtgcttaaaatgattaaaataatacaatgtatgaTGTACAGTCAGTTAGGTTTTCAGAAGCTGAATTATTCTGTTAATCTCATCCTGTGGCTTGTAACACTGATAAAAGGCACAAAACTAGACtcttttgtaaatacatttacctgTGCAGATATCTGCAGCAGTTTGAATTTATCTgaaaaagtctgttttttttgggggggggaaatgtatATACCTATGTATGCTTATGTCACATTTAAGGGGACCCCTATAACTTGTACAACTACAAATAACCAAAAATGATCTGAGGCCCAAAGATGTTTTGTTTAAGGTTCTAATCCACTGTATGGTTTCCCAGTGTCAATCAATGTATCTATCTGCATCAAGCAGTaggcattttctgtttttaatacaaaaacatgggTGTATGCAGTTTGAAGCTTTGAATTtaaatctctctttttttctgccaGTTTGAACAGAGAGACTTGCATTATTTGATGCACAAGCTTTGTACCTATGTGCAGACATGTTCCTTTTAAGTACAGACTTGTAAAATATGATGTGGTATTCttagagggggaaaaaaagagcttcttgaatgaaatgaagaaattacattttcagtattaCTTTCGGaatacatacagatatatatatatgtgtgtgtgtgtgtgtatatgtatatgtatatgtgtat

Function


GO: NA

KEGG:

id description
K09855 RASSF7_8; Ras association domain-containing protein 7/8

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU49191 lncRNA downstream 350545 6285455 ~ 6287935 (-) True G39462
TU49166 lncRNA downstream 369542 6268235 ~ 6268938 (-) True G39443
TU49135 lncRNA downstream 574663 6060990 ~ 6063817 (-) True AMCG00012732
TU49079 lncRNA downstream 743366 5816472 ~ 5895114 (-) True G39377
TU49302 lncRNA upstream 122146 6772968 ~ 6847396 (-) True G39546
TU49313 lncRNA upstream 135634 6786456 ~ 6795733 (-) True G39556
TU49319 lncRNA upstream 247165 6897987 ~ 6898237 (-) True G39561
TU49351 lncRNA upstream 499795 7150617 ~ 7150823 (-) True G39580
TU49465 lncRNA upstream 1020414 7671236 ~ 7671642 (-) True G39662
AMCG00012752 mRNA downstream 18722 6607194 ~ 6619758 (-) True AMCG00012752
AMCG00012745 mRNA downstream 178454 6452009 ~ 6460026 (-) True AMCG00012745
AMCG00012744 mRNA downstream 202849 6412731 ~ 6435631 (-) True AMCG00012744
AMCG00012743 mRNA downstream 260226 6362449 ~ 6378254 (-) True AMCG00012743
AMCG00012742 mRNA downstream 311405 6289631 ~ 6327075 (-) True AMCG00012742
AMCG00012757 mRNA upstream 164986 6815808 ~ 6823765 (-) True AMCG00012757
AMCG00012758 mRNA upstream 277708 6928530 ~ 6981212 (-) True AMCG00012758
AMCG00012759 mRNA upstream 365283 7016105 ~ 7024518 (-) True AMCG00012759
AMCG00012760 mRNA upstream 562923 7213745 ~ 7235643 (-) True AMCG00012760
AMCG00012766 mRNA upstream 627880 7278702 ~ 7289692 (-) True AMCG00012766
TU49217 other downstream 182302 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 4454317 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 4861259 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 6098889 523747 ~ 539591 (-) True AMCG00012628
TU49940 other upstream 2461619 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 5589574 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 6464071 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 11229403 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 11303241 17954063 ~ 18043587 (-) False AMCG00013042

Expression Profile


AMCG00012751 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 25.
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AMCG00012751 Expression in each Bioproject

Bar chart with 7 bars.
AMCG00012751 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 70.
End of interactive chart.