RNA id: AMCG00012755


Basic Information

Item Value
RNA id AMCG00012755
length 1732
RNA type mRNA
GC content 0.50
exon number 9
gene id AMCG00012755
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 6783452 ~ 6795729 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGCAGCCTGACATTGGGCATAGAGGGATAAATATGGCACTGCAAGACACAGACTGCAACTCATCTTTTCTGACATCTGGGCCCTGCAGTCCAGACCCCATGAACAAAGCCTGCTTATTCGATGACAGCGAGTTACTCTTTGATTCCTCAAGTGTCGGCAGCAGCCACGAGATCCCAGACCTTCTCGTTCCTGAAACGCCGAGCCCAGTTTTCTCCAAAATTCGCAAGAGGCTGCATAGGTCCAAAGGAATGAATGGAGTGATTGGGGaggaagaacataagaatGGTCTACATCAAGAGTCTACAGTGAGTGAGGAAACAGAGCCAAGGAGTAGGCATGATTGTGAACTGAGCAGAACTCCTCCCTGCCAGAAGCGGAAGCGCCGAAAGATTTCAGTTTTTGACACAATGCTGATGGCAGGCAGGAGGGACGGTGTGGAGACCATCTCTGGCCGGGGCGCTCGGAGTGCACAAGCCACGCATAATGGGTTTGTTTCCGCTTCTTCCTTGCTGGCTGCCAACCACTGTACCTCAGCCCACCCTAGGACTCCTTTCTCCTCGtcttcctcctccacctcctcttcAGTTAGTGTGGCCCCTTCATCGGGAGCCTTGGTTGGGGAAGGCCGCTCTGTGTCACCAGTATTTTTGAAGGATGCTGCGGACCAGACTCTTCTACCCACACGGAAAAGCGAGCGATCTGGAGCTCACAGCCATCACAGAGAAAGCAAGCAGAGATCCAGGTCCAGGCCACAGACAGCGCAGTCCATCCCAGCCTTCTTGCACAATGGTCAGGAACCTGGGATATTTGAGCAGGACTGGGACGACCTCCTGCCCTTTGCAGAGGATGATTTCCTCCAGAGGAGCAGGGAACCTCTCATGGCTGAAGCAGGACAGGCGGAGGAGATTGTCATCAgcgatgatgatgacgatgtcCTTGTTGAAGCGGTGGTGCGCTCTGCTCAGATGGAGGAAGATGAGGCATTTGCTAGAAGTCTCCAGCCTGGATACAATGGGAGATTTGACTACAGTGTACATTTCCATCCAATGGTTGCCTCCAGCCACCTCAGTCCCTTCATGTATAGTTTTCCTCAGTTCTCAGGACTTGACAGGGCTCTCGGACCTCGTGGTTCAAGGTCCAGAAGCTCCCGCAACAATCACCTGCATCGTGCCATTCAAGACCTGTTTGATGACAGCCAGGGAAACAATTATGAGgcactTCTTGCTTTTGAGGAGAATCAGGGTTCAGCTGTCAGCAAGCCCACACTGAGCACAACACAGATTGAACGCCTGCCGACCAAAACCTTCAATCCTGCCTACAGTGCAGGGAAGACAGAaTGTCAAATCTGCTTCTCTGACTACGCTGAGGGCGAGCATCTGAGGATATTGCCGTGTTTGCACGATTACCATGTGCAGTGTATTGATCGCTGGTTAAAGGAAAATGCAACCTGTCCTATTTGCCGAGTGGATGTTAAAACAGTCTGACTGTGAAAGGTGGTGAGGAGTCTTCCGTATGCACACCTCAGCAATGGGCCGACTTTACCTCAGCTTCTTCAGATTTGAGGGTTTGAAGAAGACCATAACATTGGATTAATGCTGTCTTATAACCCTAAACAATAATTTTAGCTGATTTTCCCCATCCCTTATTGTGAACATATATACCTTGTTTCAacactgtctgtgtttgtgtattttaaaaatttgatgaaaataaaccaaTGACTGTTTGACT

Function

GO:

id name namespace
GO:0044422 obsolete organelle part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0043233 organelle lumen cellular_component

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03013 Nucleocytoplasmic transport

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49284 lncRNA upstream 21174 6761965 ~ 6762278 (+) True G39538
TU49225 lncRNA upstream 247059 6512648 ~ 6536393 (+) True G39490
TU49169 lncRNA upstream 495516 6284934 ~ 6287936 (+) True G39445
TU49104 lncRNA upstream 726880 6053148 ~ 6056572 (+) True AMCG00012734
TU49089 lncRNA upstream 860429 5922614 ~ 5923023 (+) True G39382
TU49318 lncRNA downstream 102268 6897997 ~ 6898230 (+) True G39560
TU49358 lncRNA downstream 418016 7213745 ~ 7218459 (+) True G39586
TU49424 lncRNA downstream 565091 7360820 ~ 7362361 (+) False AMCG00012763
TU49474 lncRNA downstream 913138 7708867 ~ 7713243 (+) True G39668
TU49475 lncRNA downstream 918768 7714497 ~ 7735268 (+) True G39669
AMCG00012754 mRNA upstream 2634 6765079 ~ 6780818 (+) True AMCG00012754
AMCG00012753 mRNA upstream 23877 6643345 ~ 6759575 (+) True AMCG00012753
AMCG00012746 mRNA upstream 155636 6625994 ~ 6627816 (+) True AMCG00012746
AMCG00012747 mRNA upstream 203493 6545232 ~ 6579959 (+) True AMCG00012747
AMCG00012748 mRNA upstream 265469 6476249 ~ 6517983 (+) True AMCG00012748
AMCG00012756 mRNA downstream 28133 6823862 ~ 6843341 (+) True AMCG00012756
AMCG00012762 mRNA downstream 451433 7247162 ~ 7279658 (+) True AMCG00012762
AMCG00012761 mRNA downstream 495122 7290851 ~ 7292904 (+) True AMCG00012761
AMCG00012763 mRNA downstream 548721 7344450 ~ 7381559 (+) True AMCG00012763
AMCG00012767 mRNA downstream 600850 7396579 ~ 7422773 (+) True AMCG00012767
TU49223 other upstream 265531 6517408 ~ 6517921 (+) False AMCG00012748
TU49057 other upstream 960132 5807846 ~ 5823320 (+) False AMCG00012718
TU48986 other upstream 1230685 5552417 ~ 5552767 (+) True G39297
TU48550 other upstream 2409878 4370313 ~ 4373574 (+) True G38954
TU47822 other upstream 5958744 822151 ~ 824708 (+) False AMCG00012639
TU49477 other downstream 929759 7725488 ~ 7727828 (+) True G39670
TU49527 other downstream 1039617 7835346 ~ 7836214 (+) True G39709
TU49939 other downstream 2316731 9112460 ~ 9113101 (+) False AMCG00012820
TU50138 other downstream 3641178 10436907 ~ 10444447 (+) True G40224
TU50139 other downstream 3641178 10436907 ~ 10444447 (+) False G40224

Expression Profile