RNA id: AMCG00012762


Basic Information

Item Value
RNA id AMCG00012762
length 4197
RNA type mRNA
GC content 0.47
exon number 29
gene id AMCG00012762
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 7247162 ~ 7279658 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCGACCTGTGTTGCAACTTTATACGAGAGATTGGAGtattgagaaggaaaaaaaaaaaAAAGAAGATTTCCAAAAGTCACTGGAAAATGGCTTCAGACATCGCAGCCAGTCAGAGGCGTCACAACCCCGTGGACAGCATATGTCGGAAGATCCAGACCATTCAGAGGAGGGACCAAGAGACTAACTCCACCTTTCAGATTCCCAAATTCCAGTCTAGGAACTATGACAGCCCGCATGCCAGTCTGAAGAAGAACATGGAGGCCATTCTTAAGAACAGGACTGTGAAGAGTGACGGTGATTCTGTGTTTTTCGCGAGCCCTGGGAGGCCTGGTATGCTGACTCCCAAAGACTCCCCAGGCTCACGCTGTCCTCCCAATGGAAGGTCCCCGGCCAACACCACCTACACCACCTCCGGCTTGACTGGCAAGCCCAGGCAGGCACGCCCATGGTCCCAGAGCTGCTCCACACCCACCAATCAGATGGGAGAGAACTATTTCAGCTTGTCTTGCCTCTCCAACCTCAGCCAAACCGAGGGAAGAGGGGGCTACAGTTTTCACAAAAGCGAAAGCTCTGTGCCTAGCCTGGGGCCTTACAGTTTGCACCTCTGCCACCCCTCAGAGAACCTCCAGTGTGACCTGACTTATCAAGCCCTAGTGGTTAAAAGACTTTCAATGGGCGATGGTCCCGGTAAGGTGTATGTTTCGAGGATCGTTGATTACCTCCGCCACACCACGAGCCGGGGCTCGGAGGACAGTGGCCTTGAGGAGTTATGCAACATGCTGGACCCAGAGCACAGAGACATCTCCATCGACCTGGACACCTACCATGCCATCATGAAGGAGTGGATTGACGACTGCCGCAACCATGGtgaTGAGACAACAGCTGAAGACCTGATGGAAGATTCTCAGAAGCTGCGAGACAGTCTGTCAGCCAGGAAACCAGCCCTGATGAACATGACAGCTGGCAGCTTGGAGGCGTTTGGAGGAGAAGTGTCCAGAGGGGACCTAGAGACGTCGGATCTGGTATACTGTGTAGCTGACCTGCAGTTTAACAACCAAAAACTGCAAGACGAGGTCCGAAAAGTGAAACTGGCGGTGGAAACTATGGAGGAGACCAACAATAAGTTAATGGAGGAAAACGAAGACCTCAGGGCACAGGCTAAAAGTGGCCAGCAGTCTGCGATGAAGGAGAAACTGTTAAAGGAAGAACTGGAGGAAATGAAAGCAAACCTTAGCAATGTGGAGGAGAGCAGAGCCAGATCAGtggcacaaaacaaacagatgGAAAGGGAGAATCAGAGTCTTGTTTCGAAGATCACATCTTTGCAGGAGGAGAATATTAAGAACACTGTGGATATCGATGATCTTCAAAAGAAGATCGCTGAGCTGTGTAAAGTCAATGCTGATCTTCAGATCCAGATGCATTCATTTGATGCCATCATCAGTGCAAAGGAAGTGCTCCTGTGTGAGAAAAATGCCCAAATTCAAGAGCTGAAGACTACCATTGTGGAATATTCTTCAGTTACCGAGTTGCTGAGGGCTGAGAAGAGCAAACTGGAAAACCACATGGAGATGCTTCAGCCTGACCTGGCTTCGGGGGGTATGAGTCTCTCTGTGGCCTACAGACTTAACCAGAGCATCTCAGGTTCACTACAAACTGAGCTGGCACTTGCCCAGCAGGCACCAGAGGTTCATGGCGCAGAGCGTGTGTCCGCTTCACCATGTCACACGCCGTCTTTAGATGAAACCTTAGACAGGGAGGTGCTGTTGCTGCTTCAAGGGCCTGCACCAGAACAAATGTCTGCTGAATTCAAGACCATCATACAGAAGCTGAAAGTACAAAGTGAACTGGAAGAAAAGAGGAATATGTGGATTCACAGCATCGAGCTGCTTGACCAATATAAATGTTCGATGGAGAAGGAGTTAATTAAAATGGCAAGCAATATACGAAGGTCCAGAACAGATATGCTTCACCTGAAGAAAGAGCTGTCTGTCAGACTTCAAGAGCTGGAGGGCCAGAAGCAGCTGCAACAGGAGGCAGACAAACTGCAAGAGCGACTGCAGCACAAATTCAGAGAGGTGGCTTCCCAGACCGAGAGCCAACTGCCACAGATTGCAGAGTCAACAGCACTGCCTTGGACAGAGGAGTCTTCACGGAGATACAAACTAGGGAAAGCAGGCACTGTGTCTGGGAGCTGTGGAGAACTTTGCCGAGTGGAAGCCCATCAGGGAACACATCTGGTGGAGATTCTCAAGGGCTGGAGAAAGCGACCACAATGCCGTCCAGGGTCCACACTGCATGTCTGTGGTTCACTCTTGCTCGTATACCCAACTTTTTGCTGCGAGACACTGTCAGTTGGTGTGCAAGTTGAAGACGTCTCCACTCTATTCAGCATGAGCGACATGAAGGAATTGCCTACCTTGCCTGTGAGCTCAGTGACATCAGACAGTGACAATCAggagagtgtgtctgtgcaggagCCGGATCAGGTGTCTCCAGTGCTGTCTGATATGTCAGATGGGATTCTGTCTCCAGTCACTGGAAACCAAGGCCCTTGTGGAGTTGTGCCAAAAAAGGACACACTAACCCCAAgaagtaaatttaaaaaacacctgTCCGAGTTTGACCGTTTGTCTCTGGGGTTTAAATGCGACATGTTCACTCTGGAGAAGCGACTCCGGTTGGAGCAGAGGTCCAGGGACCTAGCCGAAGAAAACCTGAAAAAGGAGATTGACAACTGCAAAGCTTTATTGGAGAACCTTGTGCCCCTCTGTGAAGAAGATAACCAGTCAATGGAGATTATCCAGAGGCTGAGAGATAATTTAGAGGTTCTAGTCCAGTCCATGACCAGAGTCTCCAGCAGATCAGAAATGCTGGGAGCAATTCATCAGGAGAATCGTGTCGGTAAGGCTATTGAGATTATGATCCAGCATGTTGACAATCTGAAGCGAATGTACAGAAAGGAGCACGATGAACTACTGGAACTCAAAGGGACCATCGTCCAGAATGAAAGATCTTTTGGATCCTATACAGACAGAGATGATCTCCGAAGCAAGAAGAATTCAGGATCTCAGTACTATAAACAGTCGGCACGTCGCGTGAGCATTGCTGCTATACCCAGAAATGTTGGAGCTGCTGCTCATTTTGAAATGcCAAAGCTACATGAAGCAGCAGAAACTGAAGCTGACAAATTGACTAGAAGAAATAGCAACTGCTGTGACCAGCTCAGTTCCCGCCTTTCAGATATCCGCCACTCGGTCTCCAAGAGCAACAAGGGCCTGTGGATCTCCATTGTGTTCACAATACTTTTTGCTGCTCTCATTGGCCTGATCGCCAGCTTTGCGTTCCAGCCCTCTGTGGATGCGGCACCGGTGGGGACTGGAGACTCCTGGATGGCCATACAGCAGCTCCTGTGGCCTTACACTGGACTGAGGCACAACGGCCAGCCCCCTGTATGAGGAATCTCAGGAATGCTATGGAGCATTCAGGATTTCAGACCTCCTGTTTTGAGGAAAATCTTTcactttttatcattttattatgaCTTGTAATAGGCCACTGATAGCGGTGTGAAACTGGCACTTTGAGACTGTACCCCAAGTGTTTTCATTCTCCTGAAAAAGAGACAACAGCCCCCTTttgacattacattaaaaaatacattatgattTGTCAAGTAGCTAATGACTGAGCAAACTGAGCACAGATTTGATGGCTGTTGATAAAAGTatccttttttaaaaatgttattattcagATGATGGCACTTTAGTTCacagaacttttttttaaagaccatTATATAGTCCTAACATGAGCCCAGattttattactgtaattaagttaattgattatttttaggATTTGTGAACTAAATGTTAACttatggttttacatttttaatgcattaaaattgtttatattataatattatatattttttccctctctccttaGGGAGGTTTGTAGCTTGGGTTTGTCCACCAATTGTTTGTGGTGACTAGcgtttgtattttcaaaaagtTTGCTGTGTAAATCCTGATCAATGCAAACACTGTAGATGAATGTCTTTCAGAAAGAAGATTAAGaaggtggggggaaaaaaggaattgTGCACAATAAAGAAATTATTCTATTTAAACTTGGAAGTCATGAGTATGTTAACACTCTGGTTGCACACAACAGTTTGTGCACAC

Function

GO:

id name namespace
GO:0051984 positive regulation of chromosome segregation biological_process
GO:0035046 pronuclear migration biological_process
GO:0007052 mitotic spindle organization biological_process
GO:0007344 pronuclear fusion biological_process
GO:0051028 mRNA transport biological_process
GO:0000785 chromatin cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005813 centrosome cellular_component
GO:0097431 mitotic spindle pole cellular_component
GO:0031965 nuclear membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49358 lncRNA upstream 28703 7213745 ~ 7218459 (+) True G39586
TU49318 lncRNA upstream 348932 6897997 ~ 6898230 (+) True G39560
TU49284 lncRNA upstream 484884 6761965 ~ 6762278 (+) True G39538
TU49225 lncRNA upstream 710769 6512648 ~ 6536393 (+) True G39490
TU49169 lncRNA upstream 959226 6284934 ~ 6287936 (+) True G39445
TU49424 lncRNA downstream 81162 7360820 ~ 7362361 (+) False AMCG00012763
TU49474 lncRNA downstream 429209 7708867 ~ 7713243 (+) True G39668
TU49475 lncRNA downstream 434839 7714497 ~ 7735268 (+) True G39669
TU49569 lncRNA downstream 626599 7906257 ~ 7909166 (+) True G39737
TU49633 lncRNA downstream 777361 8057019 ~ 8132564 (+) True G39776
AMCG00012756 mRNA upstream 403821 6823862 ~ 6843341 (+) True AMCG00012756
AMCG00012755 mRNA upstream 451433 6783452 ~ 6795729 (+) True AMCG00012755
AMCG00012754 mRNA upstream 466344 6765079 ~ 6780818 (+) True AMCG00012754
AMCG00012753 mRNA upstream 487587 6643345 ~ 6759575 (+) True AMCG00012753
AMCG00012746 mRNA upstream 619346 6625994 ~ 6627816 (+) True AMCG00012746
AMCG00012761 mRNA downstream 11193 7290851 ~ 7292904 (+) True AMCG00012761
AMCG00012763 mRNA downstream 64792 7344450 ~ 7381559 (+) True AMCG00012763
AMCG00012767 mRNA downstream 116921 7396579 ~ 7422773 (+) True AMCG00012767
AMCG00012768 mRNA downstream 147323 7426981 ~ 7455406 (+) True AMCG00012768
AMCG00012775 mRNA downstream 542314 7821972 ~ 7832788 (+) True AMCG00012775
TU49223 other upstream 729241 6517408 ~ 6517921 (+) False AMCG00012748
TU49057 other upstream 1423842 5807846 ~ 5823320 (+) False AMCG00012718
TU48986 other upstream 1694395 5552417 ~ 5552767 (+) True G39297
TU48550 other upstream 2873588 4370313 ~ 4373574 (+) True G38954
TU47822 other upstream 6422454 822151 ~ 824708 (+) False AMCG00012639
TU49477 other downstream 445830 7725488 ~ 7727828 (+) True G39670
TU49527 other downstream 555688 7835346 ~ 7836214 (+) True G39709
TU49939 other downstream 1832802 9112460 ~ 9113101 (+) False AMCG00012820
TU50138 other downstream 3157249 10436907 ~ 10444447 (+) True G40224
TU50139 other downstream 3157249 10436907 ~ 10444447 (+) False G40224

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000020_01745382_01768397.mRNA True 5451 mRNA 0.48 37 CI01000020 1744756 ~ 1769019 (+)