RNA id: AMCG00012763


Basic Information

Item Value
RNA id AMCG00012763
length 8540
RNA type mRNA
GC content 0.60
exon number 67
gene id AMCG00012763
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 7344450 ~ 7381559 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGTGCGGACATGGAGCCGCTGCCGGCGACTTTCTATGGGAAAATAGACAAGAAAAACCCCGTCATCTCAGCTTTCGAGAATGAGATCAAAGAATTCATGGGGTTCATGAAGAGAATCAGCCCTTCGGTTAACTGGGATTACGAGTCATACACTAAAGGGTCTAAGACTCTTTTTGAAATATGGAACAAATACAAGCCCAGACTCCCCTCTTATTACTATGAAGATAATCTGCTGCTAGTTGCTGATTTTCTGTCCCGTATCAAGCTGAACAGGATGGCTCTCTGGCAGGGCTACAGCCGCTACCTGCAGCAGTTCAGCTCCTTCAACCCTGATGACATCACTGACGTCAACCAGTTCAAGAGCATCTTCTTCCCACAGGGCTTAGAGACAGACAGCGCCAGTAGAACATTCCGCGCTCTGCAGGGCTACTGTGTGTGCAGTTTCCACTTGGAGTGGGAGAGTGAGCTGCCCCAGACCCAGGCCTCAGTGCAGCGGCTCCTGCGCATCTTGGACTTCCTGAGACTCATCATGCAGGCTGTGCTGCCCCAGGAGAGCCTCTGCTGGCTGCTGTACAATGGCTCAATTTACATCTACACCATCTGTAGACACCTGATGGCACTGGGCCACTCTGCTCAGGCATTGGAGTACCTGCTGTGGGCCAGTGTGTGTCTGGAGATGTCGGTGCCTCTGCTGACAGTGGGCTATCTGTCCTGGAGGGCCACTCTGTACAGTGCTGTGTGCCAATGTTACTATGACTGCCAGGCTGGGCTACAGGCGGAGGTGTTTGCGCGGCGATCCCTAGGCAAGGTGAACGAGCTGAGCGAGCTGCAGGAGAGGAGCATGGCCCCACAGAGCCCCAAGGCACGGACAGCGTTCCTAGAAGCCACTGTCAAGATGGCAGTAATGGTGTTTAAAAGGGCAGTCTACGAACCCCGCAGGAAGCCCAAGGCGCTCTTCCGGCCCAAACAGAAGAGTAACCTAAAGGAGGTGCAGAATATGCCCTGGCCGCGGACACCCTCTGAGAAGCTCCTGATGGAGATGTTTGATGGCAGCGCAGCGCAGTTCCTCGCCCTGCAGGAGGCACTGTGGGACTCTTCACGCCGGCCGCTGCACACAGGGCCCTCTGAGGAGCACGAGCTGCAGGAGGTGTCTCTGGAACTGCTGTCAGCGGGAATCAGCATCCTGGCAGGAGGGGGCGGGTCAGGGGAGCGCAGAGGGCTGGACATGAACCTGCCACAGCCAATCAGTGGGATCCGACTGTCACCCTCCCTCCTACAGCTCGCTGTGTCTGGTGCGAGTGGGGTGTCAGTGGAGGGGGCTGTCCGCTTTGTTAAACTGCTTTTCCGCTATGAACAGTGGGAAATGTTCTCCTCGCTTTCTGCCTTACTGCTGCCACTCTTACAGGGCCTCAGCGCCCCCGTGTGGAGAACAGCCGAACTGGATTTGAAGTTGCTGGTCGCCATGGAGCCCCTTCTAACGGCACACAGGCACAAACATGCTCCGAGGGAAAGTGTGGTTCTGGGAGAAGGCGTCACGGagagagagagactggcagGCCCTGTGGTGTGGTCCGACGACCTGCTGAACCTGGTGGAAACACTGTACGCTTGTGTCTGCCTCCCAGAGCAGGGCCAGCAACCAGACGGGGATTTGGTGCTAGACGTTGTGCTGTTTCTGTGGATGAAGTGCAAGACCGTGTTTCAGAGAGTGCAGGCAGGGTATGCTGATTCCTTCCGCTACCTGCATAAGCTGGACAACCATGAAAAGTGGGTGTGTGTCCTATGGCTGCTCAGTGAAGTGGCTCAGGTGTGTAATCTGGGCCAGACTGATCCTGCCACCCTGGCAGAGCTGTCACTGCGTCTGGCCGCAGTGCTGGAGAACAGCGCTGACTCTGCGCTCAAGTCTGGAAGGATGGCAGGGAAAGGGCAGGACAGCAGCGAAGGTGCTCGGCCAGACCCGTCTGAGGGGCTCAATATTCTCAAGAGGCCCCCTGTACAGCAGCTCTGGACAGCGTATGAGGTGGTGGACAGGGCCGTGGAGGGCGTGTCCCAGGGCAGGATGGGCGCCATCACTGACATTACACGCCTACAGGACTGTGCTAGGAAGGCATCAGACTGCAGTAGCAGTGCAGTGAGGAGTGTCTGCACCCTGTCGCCCCTGCAGCTCTTCTGCATGGACCTCCACCTTGAGCTTCTCACCGTGCAGCACCGCATCGGCATCAAGCTCTGCAGTGCCTCCCCTGACACCCAGCCTGCATACAGTAAAAATATCAAGTCAGTGGCATCCTCCATAGCTGTGGACACCTCCTCTCACAATAACAGCGCTGTATCGGAGGCAGCGCTGCTGGACAGgatcaagaaaaacaagatcTCCAGGGCTCTCTTCTTGATGCAGAAGGCCCTGCACTCACCCAGAAAGGACCAACTTTCCTTTGCAAACAAGAAGCTGCTGGAGgaAGCCATGTGCTTGATTGAAAAGGCCGAAGTGGAGGAGAAGAAGCTGTTAAATGCCAATAATCTACAAGAGAGGAGGCAGGAGGGGACCAGCAGGGCCACGCCGCCCCCCGTCCTACTGTCCCGCACACAGCACTCGATGACCTTTGTCCCCGTGCCCTTCACTCCAGCTCAGCAGTCCAAGGTGTGCTGGTACCATATTTTCGGTCGAGCAGCGACAGGGAGCAACCCGAAGGTGCGCCTGAGCGACTGCCGTCTCCCGGGCTGTGGAGAGGAGGTTCCTGCTATGGGGGAGTGCGTGCTGCAAGTGACGGGGCTGGAGCCCAATGAAAAGTACATCTTTGCGGTGGCTGCATACGATGCCAATGGCGCAGTCATTGGAGATGCCATTGGAGAGAGCACCAGACCTCTGCTGGCATCCGCTCCCCTCCCTTTACTCACAGCTTGGGCACACCTGGCACAGgCAGCCTATCAGACCGGCCACTACGCCTTGGCAAAGAGGGCATCCAGAGTGCTGTGGGAACACTTCACCCGCCCTGGCGCTCCCACGTCTGAGGGATTGCCGGAGCCTGGGCCTGGTACAAAGGAGGCACCCACCCAGGCCAGGCTGTGCTCGGAGGCAGTGTCCCAGGCCTCCCCTTTGTCTCGCCTGGCTGAGTGTGAGCGGGTGTTGGTAGCTCTGGACCTGGCCCTGTGGTTGAATGACAACAGCGCCGCTCTGCAGGCTGTGGTGGAGTGTTACGGGCTGCTGGCTCCGATCATCTACCACAGGATCCCCTCTGAAGCTGTGATACAGTACTGCTTGGCCTCAGCTGTGATCGACTGGGGGaagaagctgctgcaggagtCTATGGACAGTGGGGGGACTGCCTCAGGGCCCCAGAATAAACTGCCCGCCGCTGACCAGGAAGGGAGTGAGGAGGACACCAGCGAGCAGCTCAAAGCTCTGGAGAGCATCCTGCACCAAGACCCCAACACCTGGAAAAGAGGAGCCCTAGAGCTAACAGGCCAGGAGGAGCCCACAGTGCTGTATTCAAGGGCGCTGTTTAAGGACCGACTGGACCTGGTGCTGCTCTGGGGACAGGAGATCAACCACTGGCTGAACAGGCGTGACGAGGCGCTGACGGGCATCAGGGAGGGCGTAGCCAGTGAAAGCCGGGGTCCTGGAGGTGGTGCAGAACAGGTCAGGAGGTACACCGCTGCCGTGACGGAGTACAGCAAGAAAGGGAAACCTGGACCTGACAGCACACACCCTGAGAAGAAGAGGAAGGCCCATccacagcacagacagctgCTGAAGGGACAGAGCACACTCAGGCAGCTATGCTCCGATGAGTGGTCATGGCGCTGCCAACTCAACGCCACCGTGGCCCTGGCGTACTTCACCACCGTCCGCAGGATGCTGGAGACGAGGTTCATCCCGGGCACAGACAGCTACAGACAGCTGAACCCCGCGctcttctccctccctttctctggCACCCTGGTGAGGTGGAGGAGTGTGGTCCCGGGCAGCCGAGCTCCAGAGCCCCCACTGCCCTCCAGACCGGGTCCCTGCACAGCCCCACCGGGCAAACCAGCCTCCTGCAGCAGAGACGTGCTGGGTGTGAGTGGAGGGGAGTCGACGGAGAGTGAGGGGGAGAGTGAGCAGGACACCCCCAGGACCCAGAAGACCAACGACAGTGACTCCAGCACCCAGGCCTCGCAGACCAAGGCTGCCCATAGGAGTGTTTCACAGGCACAGCTGCTGGACTCCCTGAGCAAGGCCATGCTGCACTTCAGGAGAGCCATGGTGCTGGCCCACCGCGGGGGACACTGGGCGTGTCTGCAGTGGGTGTGCCGGATGCTGTGGGACCAGGCCAGCGTGGCGGACCAGCTTCTAGGTTGGGCCGCACCCATACCAGAGCAGTCCTGCCCCCTGTCACTGGAGCATCTGCATGCCACCCTCACCCCCGTCCTCCTCCTAGCCTCACATTGCCTGCTTGACATGATCCAGAGACTGCAGGAGCCCCCTGCCACTCTGCAGGTGTGGGGGACAGCAGGGGCTCTGGGGGGTGATGAGGGAGACTCCAGTCTGCACTTCTCCTCCCCCCTGGATGATGGGACGGTGGTGAGTCTGCGGTGGCCTCACTTCACCAGAGCCGAGGAGATCTCTGGAGAGAGGATCACCTGCAGGAACTTCATCGGCCATCAGCTCGTGATTGGCTCAGCTGGCAAAGAGGAGGTTCACCCAGGCAGCTATATCGATCCAAAGGGGCATGACATATACTCAGgcGGGCGCAGGGCAATGGTGTTGGTCTCAGTGCCCCTGGACGTGGCAGACACCCTGTGCTGTTTCCGGAAGACCATGGACAGGGGGCACTACCACAGCCGTGCGCTCCAGCACAGCCGCTCCCTGCTGTGGCTGCTgctggcacacacacagcacgGTGGCGACACTCAGTGCAGCAGGGGCAGCACCAGCCAGAGCCATGGGAGGCTGGTGTTCAACATCGCTGCCAGCTCTGCCCCGGCTGCCTCCCCCCCAGACCTCTCTGCTGAGGACTTCAGCAGCTTGAGCGCCCTCTACAGTAGCACCCTGCCACACTCCCAGCTTCCCACCGTCGTCATGTCTTACACCAACACCATAGAGTTCCTCCAGGCCAATAACCAGGACTCCTTGACCGTTCAGGCTCTGCATGAGCTGGGGAATCTGTACTTTTACAGTGGGAACAAGAGGTATACCCTGACCTGTGCCATCAGCCAGCAGACACACTGCTGCattctctctgccctgctcTTCAAGGCTCTGCTCTGGGGCTCCCTGCCTCACCCCCTGTTGGACTGGGAGTACTGCTCCTACAGCCTTGGTCTGGCCTGGGACATCCCAGAGCTGCTTCCAGGGGTGGAGCTGTTCTCTGAGCCGCATCGGGCCCAGGTCGGCACTACAGTGTCCAGTCTGGCCTTCGTCTGCCAGCGGCTGTACAGCGCCGGACATAGCCTTCTGGTCCtgcctctgctctctctctatctgtatTTCGTCAGCACCGTGTGTCGAGACCAGAGACGCACCATCGAGGGACGTATTATGAAGGTCCAGGCCCTGACAGAGCTGTGTCTGTTTGCAGAGGCAATGAGGGAGCTGGGCAGTCTGCTCCAGGGAGAGAGGATCCCACAGCCACATGGCAACTACTGCCCCACCAACAAATGCCTGACCAAAAATAAGTTTGACACCAGCAAACCTCTGCTCGATTCGGCAAATTTACAGACTCTGGAGGAGCTGGTGAACCGGCCGCTGACCCCCGAGCTGAGTGCCCTGTACGGCCCCCGGCTGGTGAAGAGACTGACCCTGGCAAAGACGCAGCTCGTGATCGCTCTGTGTGACACTGTCCACGGCTACCCAgagtccccagcacaagACTCCAAAGAGCAGAGGTCCAACGAAGGGACCCAGAGGAGCTCCCCAGCCCTCCCTGGGTCGCCTTCCTCCGAGTGGGGTGAGGCGGGCAGCTGCACCCCCTCTCGGAAAACCAGGCAGCCCCGTGGCCTGCAGCTGGACCTGCAGAGGGAGAGACTGACCCCCGGCAGACTGAAGAGTCTGTTGCTGGGGGAGAGCAGTCGTACCCTGACAACGCTAATTGATGGCCTCcagccagcagggggcagtgcaGTGGAGCTGGAGATGGCAGTGGAGGCTAGGCTGCTACTGTCTGCTGTCAGTGTGCAGCAGGGCCGAGCCAACACCAGTGCCCGGCTGGCGCTGTCTGCCCTGCGGCTGCTCCAGGAGTCCCCTCTGTTCCAGGACCAGAGCCCCACGCCCTCCCAGCCAAACATCTCCCCAGCCCTCAGACAGCCAGGACACAAGAGAGGGCAGGTGAGCACAGGCGAGGCCGAGGCGCAGGGCAGTGAGGGCGGCGGGGGCTCCCTGCCCAATGAGGTGCCCCACATCGCCGAGACCCGAGAGAGGCTCGGGGCATCTCTGTGGCTGAGGTGCCGTCTGGCTGCAGGGAGAGCCTTGGCCGCACACATCCCGGGGTTGGCCGTCCACAAAGGTGTGGAGAGCAGCGGGGACAGAGCCAGGCTGCTGAGAGAGGGGCTGGAGGAGACACAGGCATGGGGAGACCCTGACACCCGCGCCCAGCTGCTCCTACAGGCTGCTCTGCTGGAGACCCACaaggggaggcagagagaggaggtcACTCCACTGCTACAGgaggCCGTCGGTCTGCTGTCCAGCCGGCTCTGGCTGTCCCCCGTCTCCGCACTGACTCTGGCCAGAGCCACGCTGCACCTCAGTGACATGCGGGGGAGAGGGGGCGACGGCGGACACAGCCTGTACTCCCTGACGCAGAAGCTGCTGCAGCAACAGCTGTCTGCACTGGGAGAGGCTGTGGAACTGGGGCAGGGGGGCGTGGTTCTCTTCCACCAATCAGCCGGCCCGAAGAACATGTACCtcccacacacacccctgtTGGCTAAAGCAACGTTGAGGCTGGACAGTGGGCCATGGGCAGAGGCTCAGTGTGTCCTGGACTCGGCCCTGAGGCTGTGCCGGGCAGCAGCCTCCAGAGACGGGGAGCTGGAATCGGACATTCTCTACTGCAAAGGTGTGGTAGAGCGTAAGCTGGTTTCCCTCGGCGAGTGTGGACCCCAGGCTGCTCTGAATTCACTCTTGGAGGCTGTCAGTGTGACCCGATCCCACAACAACAACTTGCTGCTGGTGCGAAGGTGTTATCTGGAGATGGCACTGCTGTACCTAGAGCAGTGGGCCTCCATGCCCCCCAGCCCTCAGGGCCAAGAAAACCCAGAGGAGGTGCTCCCTGCCGCCCTCTCAaccacccccacaccccccgcCAAGCCTAGAGAGGGCAGACAGAAGGGCCCTGGCTGGAGGCAGGCACAGACTCCCAACGACAGAAGCCTAAGTGCTGGGCAGGTACAGTTACTGCTCAGCTGGGTGTGTGTAAGAGCCGCTACTCAGGTGAGCGAGGCCAGTGTCCACTGTGTCCAGCTGAGTAGCTCCACTGGGGCCAAGACAGGACCCCTGCCGCTGTCCTCTATGAGAAGCCTACCAGAGTTTGCCGCCAAtgacctgctgaAGGGCAGAGAAGAGCTGCTCAGAAGCCAACTGAGCCCCTTCATTGAGGCAGAGAGCTCGGAGGCGGGACAGGCTGGCCCAGAGCTGACCTGGGTCCACCTCACCCGCTACCATTCCCATTTGCTGAACCTCTACAGCATCGCTAACAGGCCAGtggaATGTGGGTGTGCAGACAGCTCGTACTCTCAGGCTGTTGATGGCGACCTGGCCCTCAGACTGACGCAGCTGCACCGATTCTTCATCTCTAAGCTGCCCACTTACAGAGAGCACTGCTGCCCCCCTGACCCCCCCACAGCGCTACTGCAGCCCAGTAAGTCTCGGCTGGACCAGGCCTCAGAGCCAGGCCTCGATGGCGGCCTGGGGTTAGGGGACTCCTTCACTATAGCCGCAGCAGACAGTGAGCTTTGTGTGCAGTGGCACTGCCCAGCGCTGGACCCCGGGCATGCACAGAAAATGACCCTGCTCGTCTTTGCCTACAACAGCAAACCGCTCTCCGCATCCAGGCCCTCAGCTGCCAGCCTGTCTGAGCTGCGCTGTGGACACCGCTGGATCTCCCTGAACAGgCTGCAGTCTGTTCACTCCCAGCTGAGCTccctgtgtgtgagtgctgaCCTCTCATCGCCACCAGCAGCCAGCCCCCCTAGCCCTCAAGCAGAGAAGCGGCGTAGATCCCAAGGGCAACCTTGGGACCTCCTGATACAGGAGCAGGCCAGACAGTGCTGCTCACAAGTTCAGTCCTTACTGCTGGACCTCCCAGAACCTGAGGAACTCACTGAGgtgCCCTTCGAATTGAGCCTGCAGGCGCTGTGTGATCTGGAGCACTGCTTCAACCCCGCCAGTGGCTGCGTGCTGCCTGGAGGAGACGTCCTCAACTGGCTCTCTTCCCTCCTGCATTAAGCTCTGCTGAGGCCTCACTGGCTCTCTCACAGCAAGAGACAATCACAATGATCTTGCTGTGCCAAGCTCGTGTCAACTGTTTAAAtccaatgcacaaataaaatcagttcC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49358 lncRNA upstream 125991 7213745 ~ 7218459 (+) True G39586
TU49318 lncRNA upstream 446220 6897997 ~ 6898230 (+) True G39560
TU49284 lncRNA upstream 582172 6761965 ~ 6762278 (+) True G39538
TU49225 lncRNA upstream 808057 6512648 ~ 6536393 (+) True G39490
TU49169 lncRNA upstream 1056514 6284934 ~ 6287936 (+) True G39445
TU49474 lncRNA downstream 327308 7708867 ~ 7713243 (+) True G39668
TU49475 lncRNA downstream 332938 7714497 ~ 7735268 (+) True G39669
TU49569 lncRNA downstream 524698 7906257 ~ 7909166 (+) True G39737
TU49633 lncRNA downstream 675460 8057019 ~ 8132564 (+) True G39776
TU49699 lncRNA downstream 887435 8268994 ~ 8269221 (+) True G39838
AMCG00012761 mRNA upstream 51546 7290851 ~ 7292904 (+) True AMCG00012761
AMCG00012762 mRNA upstream 64792 7247162 ~ 7279658 (+) True AMCG00012762
AMCG00012756 mRNA upstream 501109 6823862 ~ 6843341 (+) True AMCG00012756
AMCG00012755 mRNA upstream 548721 6783452 ~ 6795729 (+) True AMCG00012755
AMCG00012754 mRNA upstream 563632 6765079 ~ 6780818 (+) True AMCG00012754
AMCG00012767 mRNA downstream 15020 7396579 ~ 7422773 (+) True AMCG00012767
AMCG00012768 mRNA downstream 45422 7426981 ~ 7455406 (+) True AMCG00012768
AMCG00012775 mRNA downstream 440413 7821972 ~ 7832788 (+) True AMCG00012775
AMCG00012777 mRNA downstream 480700 7862259 ~ 7864830 (+) True AMCG00012777
AMCG00012778 mRNA downstream 554821 7936380 ~ 7958975 (+) True AMCG00012778
TU49223 other upstream 826529 6517408 ~ 6517921 (+) False AMCG00012748
TU49057 other upstream 1521130 5807846 ~ 5823320 (+) False AMCG00012718
TU48986 other upstream 1791683 5552417 ~ 5552767 (+) True G39297
TU48550 other upstream 2970876 4370313 ~ 4373574 (+) True G38954
TU47822 other upstream 6519742 822151 ~ 824708 (+) False AMCG00012639
TU49477 other downstream 343929 7725488 ~ 7727828 (+) True G39670
TU49527 other downstream 453787 7835346 ~ 7836214 (+) True G39709
TU49939 other downstream 1730901 9112460 ~ 9113101 (+) False AMCG00012820
TU50138 other downstream 3055348 10436907 ~ 10444447 (+) True G40224
TU50139 other downstream 3055348 10436907 ~ 10444447 (+) False G40224

Expression Profile