RNA id: AMCG00012764


Basic Information

Item Value
RNA id AMCG00012764
length 4173
RNA type mRNA
GC content 0.49
exon number 16
gene id AMCG00012764
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 7321944 ~ 7333020 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAAATAGTTATGATATTGATAGTGATGAAGATGAAGAGCTTCACGCGTCCCCAGAAGTAATATTTTGTGAACTGATTCCTGTAGGGGTGGGGTGCGGTGGGTCCCCATCACTTAGTTTAGGAACTGAAGAACTGCGAGTAGACGGCGTCAAGTTGAACCACGTGACTGTGAAAGCGAGCCGGCTGGTGTGTTTTGGTCCTGCCGCGTTACCTGGAGAGAGGAGCCGCGACGGAGACGGGGATTGCGGAGCAACAGCGCATCATATAAAGCGCCACGAAGAGGGCTGTGAGGAAGGGACCTGCATCGGAGTGCGATACAACGACAGACAGACCAGCAAAACCGGTCAAGGCTCCGCCATGGACGAGGTCCCTCGGCTGGTGTCAAGTGGAGATGACGTGAAGATCTGGAACACGTCCTCCATGACGGTTTTGGAGCAGTTCAACCCACACAGCGTCACTCACCCTGTGTCCCGGGTGTGTTGGAATCATTACCTGGTCAGCTCCAGTACCAGTGGGGACAAGCTGGTGGTGTCCAGCTGCAAGTCATCTCCTGTACCCGTCCTGGAGCTTGCTGAGGGGAAAAAGCAGACACGTGTCAGTCTAAACTCCACGTCCCAGTTCATGGTGAGTGGAGGCCTGGACTGCACTGTCAACATCTGGGACCTGAAGACCAAGAAGCTGCATCGCTCCCTCAAGGACCACAAAGAGGAGGTGACGTGCGTGTCTTTCAATGGCAGTGACAGCTACATCGCCTCAGGTTCAACAAGCGGCGAGATCATACTGCACAGCATCACCACCAACCTCTCGAGCAGTCCATTCGGACACGGGCCCAACCAGCCTATCCATGACCTGCGGTACTCCTACTATAAGAAGTCTGTGCTGGGCAGCGTGTCGGCCAGCGGCGCCGTGGTCCTGTGGGATGCCAACACTCAGAAGGACCTGCACACGTTTGAGGGCACACACAGAGCGCCTGCATCTGGCCTGGCCTTCTCCCCCGCCAACGAGTTGCTCTTTGTCACCGTGGGGCTGGACAAGAAGATCATCTGCTATGACACCTCCAGCAAGATTGTCCTTCACAGCATCCGTGCGGAGTCCCCCCTCACAGCCATAGACTTCATGTCGGACGGTGCGGTGCTAGCCGTGGGCTCCTCCCAGGGGAAGGTGTACCTGTATGACCTGCGCATGCTCACCTCCCCCACGAAGACTGTGGCTGCCCACAAGACCTCCGTGCACTGCCTCCGCTTCCAGCACTCTCACTCGCACCCCAAGTCCAGCAGCAAAGCTCTTTACAGCAAGTCCTCCAATGCTCAGGCCTCTAATGGCAGCAAGAGGTCGTCATCAAGGACCAGTGGACACAGCATCCCCACTCCCCAGGAGGGGCTCCAAACGCTGGTGCCCCGCCCCTCTCCCCAGCCAGCCCCCGAGCCTCCCCCAGGGCACCAAGGAGATGGCCGGGCTGACAGCACAGGAATCCCgagcagcagcagcttggatGTTTTCCCATCTAAAGAGACTGAGGTCCCCAAGAGCTCCGAGAGGCTCCCGAGCCTCTCCCGATTCAACAACGTGGGCCGAAACAGCCTGGATGTCTTCTCGCCCGTGAGAGACGatTACAAGGCACTGAAAGCAACTGGAGACCTCAAAAAAGGTGAtgTGATGGACTTCTTGTCGCAGTTCTCCAGCACTCTTCCTGCCCGTAGGACTCCCCTGGGGACCCCAGGGGGGCAGGGCTACAGCCCCCTGCAGGTTTTTGATGACTCCCCGGACCCGGTCAGGCAGGAGGGGAAGTCCCAGGCAGAGGAGCCCAAAGCCAGCAGAGCTCAGCTTGGACTGCAGGAGACGAAACCAGTGGAAATGACCAGCAGCTCTAGGCTTGATCAGTGCTCCCAGCACACCCCCACGCCGCTGGCTCAGCCCCACACACCTGAGGCCATTCAGAAGAGGGGGAAGGATGTGCAGAGTGAGCTGCTTTACAACAGCCCCCTGAATGGAGCCCCCTCTCCTGCCACCAGCCCGGAGGTGTCCGCTGCCGTCACCGCCGGAGTGGCGTCCTCGCTGTCGGAGAGGATCGTGGAGTCCATCGGTGGAGAGGCCGGCGGGGCGCCACTCACAGCCATTCAGATCCACTTCATCAGGAACATGATCCAGGAGACGCTGGAGGACTTCAGAGAGGCATGCCACAGGGATATTGTCAATCTGCAAGTGGAGATGATCAGGCAGTTCTATATACAGCTGAATGAAATCCACTCCCTGATCGAGAAGTACTCCGTGACTGACTCGCTGGTGGCGGAAATCGAGAAACTGAAGGAGGAAAACAAGCGATTGAGAACAAACTTCTGAaggctgcttgttttctttcttattttttgttcttgtggCTCTCTTCACCTGGCAAGGAGAgctgccacagacagacagacagacagtgaagCACACAAGCCTCCTGATGCTGGAGAGCTGCTTTCCAAAGAGCCCCTTGGCCCCAGTCCTGGGGGGAGGGGCAGAAATATGCAAATGGAGAGAGGGTCCTGTCCCTTCAGAGCCAACCTGCCCTTTTTATACAGATGCCGTCTCCCCTTAATATATGGAGAAGAGCGAGGACTCGTGGGGAAGACAGTGACTCGGaacaacagttttgttttattgctatgATTATACAAGGTGCGACAGATTTCAAACTACAGCAATTATGTGCCTTATTTTAGCATCTCTAACATAAAAACTGTACAAGAAAAGGATCTTAAGTCCAGCTGGCCATTTAACGGCCTAATTAAATGTGAGTGTCTTCATACCTGAGACCCTTGCAGTTGAAGCAAGCTGCAGTAAAAGCTCCGTATTAAAGCAGAGGCTAAACCTGTTCCCCTGTCTACCTCTCTAGAGCTCTAAACTTCCCCCGTCTTTTACCTCACTAATGCACTAATGTGTCTGATGCCTTTAGCCATCCTGAATAATTTAACAGATAACTCTTGTTGTTCTTCCTAAAATGTGTACTAGCTGTATTTTCTGCTATACATTTGTAACCCAGCTGGCAGGTGgaattagttttgtttagtttagtttagtcaTGGACTGAAGTGAACCATATCAACCTAATTCAAATGTTTGTCTGGTTGGCCCTGCCATAGATCACAATTCATATCTATTCTGAGGAACCCAGTGGTTGTATTCCTCTCTGGGGCTGTTCTTTTCTCCCTTCCTTAAGTTTGGTAATGAAGACTATCTTCTGCAGAGATTCTCCCTTTTTATTGATGCGCAGACAAAAAGTAAAGAGTGGTGCTTCAACAAAGCAATGGAGGaagattttaattgaattgtgttttttacaaCAAACATCTGGTTGAGCAAAGCCGTAAAATACTATTGGATAATGAAGGTTATGCAAAAGCTAGATTGATCTATAACTGAAAGTTGTAGGGCTTTGATCTAAAGCAGTGTTTCTctatcctggtcctggagtaccacctacactcctggtttgtgtttcagctgagctgtcaattacttaattgaacccttaattgaactaatttcctaaatcagagcattttaattatttttaacagtagggggtttaagttaagtataaaattgtataaggaaattatcttaAGGAACCAACGTTTTAtcatttatacaatttaaagattcaaatgtaatcaaattacttcaattaagtaattgagagctctgttggaacacaaaccagcagggtaggtgttCTGCCAGGACCAGGATTAATAACCACTGATCTAAAGCAATGGAAATCTTGTAGAAATGGGTAATAGTGTCCAACAGGTGGCCCTTGTCACTGATATTTTCATATAAGGGAGTGCATTTTCAAGGTTGTTGTTCTGCCTACACAACCTGTTCttgataaataaattaccagCTGAAGAGCATGCTTCAAGGATCTATACTCCTTTTGAGCAAGGTTGTAATGCACATGTTAAAAAATAGTCAGTTTCTTGGAATTGTAGCAGAATTCagtactgtttttttcttcatgaaacCACAGCAATAAATATCCGACACTGACTGATTAATAGAGCAACtgtcatgtttttcttattaaaacaaatttagatgtttaaaatgttactatCATGGAGGAAGTTTTTTATGCATAAAAGCTCACACAAATGATGTTCTGTAATGCAGCCTTGAGCGAAA

Function

GO:

id name namespace
GO:0071539 protein localization to centrosome biological_process
GO:0005813 centrosome cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K16547 NEDD1; protein NEDD1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49351 lncRNA downstream 171121 7150617 ~ 7150823 (-) True G39580
TU49319 lncRNA downstream 423707 6897987 ~ 6898237 (-) True G39561
TU49302 lncRNA downstream 474548 6772968 ~ 6847396 (-) True G39546
TU49313 lncRNA downstream 526211 6786456 ~ 6795733 (-) True G39556
TU49269 lncRNA downstream 626020 6638507 ~ 6695924 (-) False AMCG00012751
TU49465 lncRNA upstream 338216 7671236 ~ 7671642 (-) True G39662
TU49523 lncRNA upstream 494258 7827278 ~ 7828147 (-) True G39707
TU49559 lncRNA upstream 558557 7891577 ~ 7895726 (-) False AMCG00012782
TU49700 lncRNA upstream 935974 8268994 ~ 8269221 (-) True G39839
TU49798 lncRNA upstream 1235032 8568052 ~ 8569889 (-) True G39929
AMCG00012766 mRNA downstream 32252 7278702 ~ 7289692 (-) True AMCG00012766
AMCG00012760 mRNA downstream 86301 7213745 ~ 7235643 (-) True AMCG00012760
AMCG00012759 mRNA downstream 297426 7016105 ~ 7024518 (-) True AMCG00012759
AMCG00012758 mRNA downstream 340732 6928530 ~ 6981212 (-) True AMCG00012758
AMCG00012757 mRNA downstream 498179 6815808 ~ 6823765 (-) True AMCG00012757
AMCG00012765 mRNA upstream 725 7333745 ~ 7343454 (-) True AMCG00012765
AMCG00012769 mRNA upstream 54948 7387968 ~ 7390834 (-) True AMCG00012769
AMCG00012770 mRNA upstream 145374 7478394 ~ 7534439 (-) True AMCG00012770
AMCG00012772 mRNA upstream 369358 7702378 ~ 7719893 (-) True AMCG00012772
AMCG00012771 mRNA upstream 392468 7725488 ~ 7730823 (-) True AMCG00012771
TU49217 other downstream 865766 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 5137781 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 5544723 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 6782353 523747 ~ 539591 (-) True AMCG00012628
TU49940 other upstream 1779421 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 4907376 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 5781873 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 10547205 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 10621043 17954063 ~ 18043587 (-) False AMCG00013042

Expression Profile