RNA id: AMCG00012767


Basic Information

Item Value
RNA id AMCG00012767
length 2218
RNA type mRNA
GC content 0.45
exon number 13
gene id AMCG00012767
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 7396579 ~ 7422773 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCAACCGGAAAGAGAAGGGCAAGCCGAGCTCCGGCATCCACAGCAGCATGTCCACAACCCCGGTCCGATCGCCGACTCTGCAGCCCGGCAAGATGAAGAAGGACGAGTCGTTCCTGGGGAAGCTGGGAGGCACGCTGGTGAGGAAGAAAAAAGCCAAAGAAGAGGAAAATGCAGAGAGGACTATGCTGGACCCCACCTCCAGGGACGACTCCAAGTTTAAAGAGCTCCTCAGGGTGCTGATTGACTGGATCAACAACGAGCTGGAAGAGGAGAGAATCATTGTGAAGGACCTCGAGGAGGATGTCTACGATGGACAGGTGCTGCAGAAACTTTTTGAGAAGCTGTCGGGGCGGAAGCTGAACGTGGCCGAGGTGACTCAGTCCGAGATAGGACAGAAGCAGAAGCTCCAGACGGTTCTCGAGGCCGTGAATGAGTTGCTGCGCCCACACGGCTGGGCCCTGGACTGGAGTGTGGACGCTATCCATGGCAAGAACCTGGTGTGCATAGTCTCCCTGCTGGTTGCCCTGGCGATGCACTTCCAGGCTCCCATCCGTCTGCCTGAGCATGTGTCTGTGCAGATGGTGGTGGTCAAGAAAAGAGAGGGCATTCTTCAGACATCGCACGTGACGAAGGAGCTCACTACCACCACAGAGATGATGATGGGGAGATTTGAAAGAGATGCCTTTGACACCCTGCTGGATCACGCCCCTGACAAGCTGAATGTTGTTAAAAAGTCTCTTATCACCTTTGTGAACAAACACCTCAACAAGCTGAACCTGGAGGTAACCGAGCTGGAATCGCAGTTTGCAGATGGTGTGTATCTAGTGCTGCTGATGGGACTGCTGGAAAACTACTTTGTTCCTCTTTACAATTTCTTCCTCACCCCCGAGAACTTCGATCAGAAGGTTCATAACGTGGCATTCGCCTTTGAGCTGATGCAGGATGGAGGACTGAAAAAGCCCAAAGCTCGCCCAGAAGATGTTGTCAACCTGAATCTGAAATCCACCCTGAGGGTTCTCTACAACTTATTCACCAACTACAAGAATGTCGAGTGAAGTTCAAGTTGGCCTGAACGTGATGTCCAAAGACGGTACAAACATTTTGACAGCTGGTGTTCACGCTGGTCTGGCAAATTTGACCGAACTGCAGGGACAATAATTTGCAATGCAATGATGCAAGCTTTGTAGCTTCTCTGGTGATCTCACCCCCAACAACTTCCCcatcctacacacacacacacacacacacacacacacacgcgcgcaaAGTTTTCTCTGTCCAttcattgcaatacatttttaaaatctgaccTGATATAAATTGTTTAAGGATTGTATGCAAGAcccacaattaaacaaatgttgtaAAGGTGTATTCCCTGGGTTTGGAATGTAACCCTGACATTAGAGGAATGTATTGCACTGCAGCTTGCGTTACTTTGTTATAAATATCTCAGCTCAGATACAgtgatctgtttttgtttgcaaacAATTATAAATTAGGCATCCACTATAAAACAGCTACATTAATCACTGCTGCAGTAACATGCAGGCATTTTGTGTGGAAGTTGTACCTGATACTTTTACAGTGGTAGAGACCACTGATTAATGAAGTGCACATTGATTCGATTTTTTAATACCCGTTAGAGAATCGTTGTAGTCTTTATTTCAGGTTTTGGTCttaattttgtaatatgaaaCGGTTACTGAACTGTAACTAaaagccttttttgtttctgcaacacattgtttaatttgtaaaccGGTGTTCTCCAACAGAAGACATGGCTTTAATTGCAGTTTTTGACACTTTTACCCTTCATCTCTTTTAACCCTTGGCCAATTATTCCTTGCCTGCTTTTGAGGATCTAAGCCATGTGCCCGGCTCAGCACCTGGGTTCTTAATTAAGCCATTCTTATTAGATGTTCTCAAATGTTTCTGAATTGTTCATCCATCTGCTGCTGTTTATCCAAGTATTGACTCCTCAGTGAAGCTGGTGTCATTTTGCATTGATACAGACAGGCAACAGATTGTCCAAAAGCCTTTCTAAAGAACCATATGTACAGAGAGTGTCCATGCATGTGTGCCGGTGTTGAATTATCACTAGTCATGTTTTTGGAAGACTAGCACCTGGATattaaaagcagttttgcaGCATAGGTATTTATGAATGTGTTCTACTGTTACTTTCTTGTAATAAAATCTCTAAAAGCA

Function

GO: NA

KEGG:

id description
K06275 PARV; parvin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49424 lncRNA upstream 34218 7360820 ~ 7362361 (+) False AMCG00012763
TU49358 lncRNA upstream 178120 7213745 ~ 7218459 (+) True G39586
TU49318 lncRNA upstream 498349 6897997 ~ 6898230 (+) True G39560
TU49284 lncRNA upstream 634301 6761965 ~ 6762278 (+) True G39538
TU49225 lncRNA upstream 860186 6512648 ~ 6536393 (+) True G39490
TU49474 lncRNA downstream 286094 7708867 ~ 7713243 (+) True G39668
TU49475 lncRNA downstream 291724 7714497 ~ 7735268 (+) True G39669
TU49569 lncRNA downstream 483484 7906257 ~ 7909166 (+) True G39737
TU49633 lncRNA downstream 634246 8057019 ~ 8132564 (+) True G39776
TU49699 lncRNA downstream 846221 8268994 ~ 8269221 (+) True G39838
AMCG00012763 mRNA upstream 15020 7344450 ~ 7381559 (+) True AMCG00012763
AMCG00012761 mRNA upstream 103675 7290851 ~ 7292904 (+) True AMCG00012761
AMCG00012762 mRNA upstream 116921 7247162 ~ 7279658 (+) True AMCG00012762
AMCG00012756 mRNA upstream 553238 6823862 ~ 6843341 (+) True AMCG00012756
AMCG00012755 mRNA upstream 600850 6783452 ~ 6795729 (+) True AMCG00012755
AMCG00012768 mRNA downstream 4208 7426981 ~ 7455406 (+) True AMCG00012768
AMCG00012775 mRNA downstream 399199 7821972 ~ 7832788 (+) True AMCG00012775
AMCG00012777 mRNA downstream 439486 7862259 ~ 7864830 (+) True AMCG00012777
AMCG00012778 mRNA downstream 513607 7936380 ~ 7958975 (+) True AMCG00012778
AMCG00012786 mRNA downstream 611321 8034094 ~ 8034399 (+) True AMCG00012786
TU49223 other upstream 878658 6517408 ~ 6517921 (+) False AMCG00012748
TU49057 other upstream 1573259 5807846 ~ 5823320 (+) False AMCG00012718
TU48986 other upstream 1843812 5552417 ~ 5552767 (+) True G39297
TU48550 other upstream 3023005 4370313 ~ 4373574 (+) True G38954
TU47822 other upstream 6571871 822151 ~ 824708 (+) False AMCG00012639
TU49477 other downstream 302715 7725488 ~ 7727828 (+) True G39670
TU49527 other downstream 412573 7835346 ~ 7836214 (+) True G39709
TU49939 other downstream 1689687 9112460 ~ 9113101 (+) False AMCG00012820
TU50138 other downstream 3014134 10436907 ~ 10444447 (+) True G40224
TU50139 other downstream 3014134 10436907 ~ 10444447 (+) False G40224

Expression Profile