RNA id: AMCG00012768


Basic Information

Item Value
RNA id AMCG00012768
length 1637
RNA type mRNA
GC content 0.51
exon number 16
gene id AMCG00012768
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 7426981 ~ 7455406 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTAGATTAGGTATTTCTGTGAAAGGGCAGTCATTTCCCGTGAGTCTTCAATTAAATCTTAAATGTATTCACGTCTTTATCCATAGGTATATATGTGCATTGCTCGGTTGTagagattttgtttgtgtttgtcatcTGTGGGCACCGTCCTGACACTTTTGTACAGCCGTTCAGTTCCACTTTTCACAGGAAGAGAGAAGCTACTGCAAAGGGAGTTCTCCTTTTCATTTGAGTGCAGTGCATACACACAGTAACTCCCTGTAAGAGACATGGAAGCGGATTTTAATGAGATCTTTGGGCAAGCTGCTTTACGGAGCAAACCATCAGAGGATCTGGAAGGCTTTCTGGGTGAAAAACGAAAAATCATTCAACCCAGCTCTCTGAAGGATCCCAAGCTTGAGGAGTTGAAAACGGTTCTGATTGACTGGATCAATGACACTCTGAAGAAGGAGCACATTGTAGTGCAGAGTCTGGAGGAAGACATCTACGATGGGCTTGTCCTGCATCACCTGCTGGCCAGGTTGGCGGAGCAGAAGCTGGAGGTAGATGAAATTGCTCTGACAGCTGTGGCTCAGACCCGTAAGCTGGGGATCATACTGGAGGCCCTGCACAAGAGTCTGGGGTTGCCAGAGGAGGCCGTGCAGAAATGGAATGTTGCCCTGATCCACAACCGGGACCTGCTGGCCACCTTGCATCTACTGGTTGCCATGGTGAAGAAGTTCCAGCCAGAGAAGCAGTTGCCCCAAAATGTGTCCCTGGAAGTTGTGATCGTGGAGGTGAGCAAAAGTGGAATTAAATCTGAGAAATATACAGAGAACATCACTGAATCAAGtaATTCCTCGGATGGGAACTCTAAAACAGAAGATGCCATTGATGAGCTGCTGAAGCTGGACCCACAGAAAGTCATCACAGTGAAACAGgcaATTTTACACTTTGTGAACAAGAACATGGCCCGCCTAGGACTACAAGTGTCTGACATGGACACACAGTTTGGCAATGGGGTTATATTGCTCTTGCTGATCGGGCAGCTGGAAGGATACTTTGTTCATCTGAGTGAATTCTACTTAAATCCTTCCAATAACTCCGAAATGTGCGAGTCCCTCACTGACCTGAGAGGATCGGCTCGCACCTGCGCCTCTGATGTCATGGCTGTCTGCCTTCTTCACAGACACGCCCACGGTTACACCGGCAGAGCGGTACACTGGGTGGCCTCTTGTGAAACTAGTCTCACCTCGTCACTCATCCTACCAGGCCAGGAAAGTCTTCATCACAACTGTGGCAGAGACAGTCCTGGAAGAGAGGcctgggggtgggAAGAGGCAGAAGCAGTCAAGCCCTCCCGTGACCTGAGACACTGCCGGCACCAGACGGCACCACCTGCTGGGGCTAGGAAGCAAGTGAAGAATAGCAGACTTCCCCAGTGCTTCTGTGTGCCCTATGGTGCCCCTGttcagggagagagacagaGAGTGTCCCTGCGGTCGTGTGCCAATGGGTTGTGGGCACCAGCAGCTGGCACTGAAGGCCAGGAGCCCCTGGAACTCTTGTGCCTTGAAGCAGATGGGCCCTCGTTTGACTCCACGGCAGAAAGGATGGCCTCCATCAGCCCCGCCAAGCCCCACACCACCAGGAGGTGA

Function

GO: NA

KEGG:

id description
K06275 PARV; parvin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49424 lncRNA upstream 64620 7360820 ~ 7362361 (+) False AMCG00012763
TU49358 lncRNA upstream 208522 7213745 ~ 7218459 (+) True G39586
TU49318 lncRNA upstream 528751 6897997 ~ 6898230 (+) True G39560
TU49284 lncRNA upstream 664703 6761965 ~ 6762278 (+) True G39538
TU49225 lncRNA upstream 890588 6512648 ~ 6536393 (+) True G39490
TU49474 lncRNA downstream 253461 7708867 ~ 7713243 (+) True G39668
TU49475 lncRNA downstream 259091 7714497 ~ 7735268 (+) True G39669
TU49569 lncRNA downstream 450851 7906257 ~ 7909166 (+) True G39737
TU49633 lncRNA downstream 601613 8057019 ~ 8132564 (+) True G39776
TU49699 lncRNA downstream 813588 8268994 ~ 8269221 (+) True G39838
AMCG00012767 mRNA upstream 4208 7396579 ~ 7422773 (+) True AMCG00012767
AMCG00012763 mRNA upstream 45422 7344450 ~ 7381559 (+) True AMCG00012763
AMCG00012761 mRNA upstream 134077 7290851 ~ 7292904 (+) True AMCG00012761
AMCG00012762 mRNA upstream 147323 7247162 ~ 7279658 (+) True AMCG00012762
AMCG00012756 mRNA upstream 583640 6823862 ~ 6843341 (+) True AMCG00012756
AMCG00012775 mRNA downstream 366566 7821972 ~ 7832788 (+) True AMCG00012775
AMCG00012777 mRNA downstream 406853 7862259 ~ 7864830 (+) True AMCG00012777
AMCG00012778 mRNA downstream 480974 7936380 ~ 7958975 (+) True AMCG00012778
AMCG00012786 mRNA downstream 578688 8034094 ~ 8034399 (+) True AMCG00012786
AMCG00012785 mRNA downstream 586396 8041802 ~ 8077147 (+) True AMCG00012785
TU49223 other upstream 909060 6517408 ~ 6517921 (+) False AMCG00012748
TU49057 other upstream 1603661 5807846 ~ 5823320 (+) False AMCG00012718
TU48986 other upstream 1874214 5552417 ~ 5552767 (+) True G39297
TU48550 other upstream 3053407 4370313 ~ 4373574 (+) True G38954
TU47822 other upstream 6602273 822151 ~ 824708 (+) False AMCG00012639
TU49477 other downstream 270082 7725488 ~ 7727828 (+) True G39670
TU49527 other downstream 379940 7835346 ~ 7836214 (+) True G39709
TU49939 other downstream 1657054 9112460 ~ 9113101 (+) False AMCG00012820
TU50138 other downstream 2981501 10436907 ~ 10444447 (+) True G40224
TU50139 other downstream 2981501 10436907 ~ 10444447 (+) False G40224

Expression Profile