RNA id: AMCG00012770


Basic Information

Item Value
RNA id AMCG00012770
length 588
RNA type mRNA
GC content 0.55
exon number 5
gene id AMCG00012770
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 7478394 ~ 7534439 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTATCTCTGattGTCCTAGATCCCCCACAAATCTCCTGTCTTCTGTGCCTGTACTATCCGTTAGATACACATGAGGACAAGAAGATGACTATCACCAGTCGGCAGTCCTTCAATGTCCTGGCAGTCATTTTCCTTCTGCTGTCAACAGCAGCTCTCTCCGCACACTTTCGAGTCTGTGAGCCGTACTCGGACCACAAGGGCCGCTACCACTTCGGCTTCCACTGCCCGCGTCTCTCTGACAACAAGACCTACATGTTCTGCTGTCACCACAACAACACCGCTTTCAAATACTGCTGCAACGAGACGGAGTTCCAGAAcgtcatgcagatcaacctgaCAGGGACGACCGACGACTTCCTGTACTACTCTGCCATGAACTACGAACTGTGTCGGTATTACCTGGTCAAGTGGGGCTTTGGTGGCCGCTGGCTGAAGCAGGCGAGGAGTCAGTGGAACAGTCCCATACAGGGGGAGAGCCAGCCACTGCCACAGCTGCTCCCTCAGGCCCCCCAGCCAAGACACAGCCTCAGGGCAGAAGCACCAAGTCCCACGCTCATGTCCTTCCACACCTCGACAGCCTGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49351 lncRNA downstream 327571 7150617 ~ 7150823 (-) True G39580
TU49319 lncRNA downstream 580157 6897987 ~ 6898237 (-) True G39561
TU49302 lncRNA downstream 630998 6772968 ~ 6847396 (-) True G39546
TU49313 lncRNA downstream 682661 6786456 ~ 6795733 (-) True G39556
TU49269 lncRNA downstream 782470 6638507 ~ 6695924 (-) False AMCG00012751
TU49465 lncRNA upstream 136797 7671236 ~ 7671642 (-) True G39662
TU49523 lncRNA upstream 292839 7827278 ~ 7828147 (-) True G39707
TU49559 lncRNA upstream 357138 7891577 ~ 7895726 (-) False AMCG00012782
TU49700 lncRNA upstream 734555 8268994 ~ 8269221 (-) True G39839
TU49798 lncRNA upstream 1033613 8568052 ~ 8569889 (-) True G39929
AMCG00012769 mRNA downstream 87560 7387968 ~ 7390834 (-) True AMCG00012769
AMCG00012765 mRNA downstream 134940 7333745 ~ 7343454 (-) True AMCG00012765
AMCG00012764 mRNA downstream 145374 7321944 ~ 7333020 (-) True AMCG00012764
AMCG00012766 mRNA downstream 188702 7278702 ~ 7289692 (-) True AMCG00012766
AMCG00012760 mRNA downstream 242751 7213745 ~ 7235643 (-) True AMCG00012760
AMCG00012772 mRNA upstream 167939 7702378 ~ 7719893 (-) True AMCG00012772
AMCG00012771 mRNA upstream 191049 7725488 ~ 7730823 (-) True AMCG00012771
AMCG00012774 mRNA upstream 200392 7734831 ~ 7742031 (-) True AMCG00012774
AMCG00012773 mRNA upstream 222638 7757077 ~ 7787652 (-) True AMCG00012773
AMCG00012776 mRNA upstream 305930 7840369 ~ 7841180 (-) True AMCG00012776
TU49217 other downstream 1022216 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 5294231 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 5701173 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 6938803 523747 ~ 539591 (-) True AMCG00012628
TU49940 other upstream 1578002 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 4705957 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 5580454 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 10345786 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 10419624 17954063 ~ 18043587 (-) False AMCG00013042

Expression Profile