RNA id: AMCG00012777


Basic Information

Item Value
RNA id AMCG00012777
length 1647
RNA type mRNA
GC content 0.50
exon number 2
gene id AMCG00012777
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 7862259 ~ 7864830 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACATCTGTAAAACAGCGCAATAAAAGTAACGCCGGCGACAGGAATTCCCATGCATCGCCTGATGACGTGGCGAAGAAGGCTCCCAAAGCCAGCAAAGCGGGTAGTCCTCCTGGTTCGGGGATTTGGGGCAAACTTCTGGCCGTGGGGTTTTATTTGGCACTATTATCTGCGGCGGGGATCGCCGGCTTTTACCTGCAAAGAGTGCTGGAGGAGGTGAGCCAGATCAACAGCAGACATGAAGACTCAGTGGTGAAGAATGGGGAGCTGACAAAGAGCATGGAGAGTGTCCTCCAGCAGGTGGACTCTATAAAGCAGGCTGTGGGCAAATTTGACTCCTCTTTAAAGGACACAAAGAGTGAGCTGGACAACACCAATAAAGCTGTGAGGAAAGGTGAGACGGACACACGGCGCATCGAAGAGGTCCTACATAAACTGCAGAACGAGATTCTCAGGGACTTGTCTGACGGCATTCGAGATGTGAAAGAAGCCAGGGAGAGGGATTTCTCATCGCTTGAGCAAACGGTGGAGGAAAGGCTCACAGAGCTTACCAAGTCCATAAATGATAATGTCTCAGTGTTCACTGAGGTCCAAAGTGAAACGCAGAGCGAGTTGCAGAGTCTCAAGTCCAAGATTGATGTCGTTGAGGACCTGAGGCTGCTAAAGAAAGAGCTACAGGGCATCACAGGCACGGTTGCAGAGTTGCAGTCAGCCAGTCAAGGCAAAAACGAGGTCACGGACACTGTAAGAGAGCAGTTGGTCTCTCTGCAAGATGAACTTCAGACAAGGAATGCAGAGGTGGCTTCCACTGTCCAGGAGATTGAGGAGGTTAAGGAGATGGTACAGAGTACTGCCACTTCCCTCAGGAAGTCTCTGTCTGAAGTGGAAAGTACCATCCAGTCCCTGTCAAGCCAGGTTCAGAGCACACAGGATGGCCTACAGCAGGCCACGGATCGCTTTCAAGACCTGGAGCAGGGTCTGCAGGCTAAGACCAACCACATAGAGAACAACTACGGTACCTTAGAGTCCAGGCTGAAGGCGATTGAGGAAAACGCAGAATCTCTCCTTGCATCGGCCTCTGAACAGTCGGAGAAGCTGGAATCGGTCCTGTCCAAGTATGACTCTCACGAAAGCAGGCTGGCCACATTAGGCAGGGATGTAGAGAATGCAAAGTCCTCTGCTTCCGAGGGAGAGGTCTCCGCCTTGCAGAACACAGTGAGGCAGGCAGCAGAAGCACAGGAGGCCTTTGGCAATGATATGGAAATGCTGAAGAACAACGTGGATGAGCTTCAAAACGCAGTCACGGCACTGGGTGGTGCGGAAAAAGAGTTGGATGACAGCCAGAAACAACAAATTGAGGAGCACGAACAAAGACTGGCGACTCTGGAGGATGCTGTGAAAGCCCAAGCCTCTGGGGGAAGTGGGCAGACTGTGGAATTGAGTATTAGTGAACTGAAAGGCTCAGTTAGCAAAACACAGACTGACCTACAAATGCTAAGAACTGCAGTGGACAGTTTAGTGGCCTACTCTGTAAAAATCGAAGGAAACGAAAGAGAGATTGCTTCCCTAAAAAGTCTTCTGGATGAAACCAAAACTTCTTTGGAATTATTTTCCATCAAACTAGAATCAGTCCAGGAGAAGATCTAA

Function

GO: NA

KEGG:

id description
K13999 CKAP4, CLIMP63; cytoskeleton-associated protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49475 lncRNA upstream 126991 7714497 ~ 7735268 (+) True G39669
TU49474 lncRNA upstream 149016 7708867 ~ 7713243 (+) True G39668
TU49424 lncRNA upstream 499898 7360820 ~ 7362361 (+) False AMCG00012763
TU49358 lncRNA upstream 643800 7213745 ~ 7218459 (+) True G39586
TU49318 lncRNA upstream 964029 6897997 ~ 6898230 (+) True G39560
TU49569 lncRNA downstream 41427 7906257 ~ 7909166 (+) True G39737
TU49633 lncRNA downstream 192189 8057019 ~ 8132564 (+) True G39776
TU49699 lncRNA downstream 404164 8268994 ~ 8269221 (+) True G39838
TU49733 lncRNA downstream 471068 8335898 ~ 8342053 (+) True AMCG00012797
TU49788 lncRNA downstream 671403 8536233 ~ 8569891 (+) False AMCG00012803
AMCG00012775 mRNA upstream 29471 7821972 ~ 7832788 (+) True AMCG00012775
AMCG00012768 mRNA upstream 406853 7426981 ~ 7455406 (+) True AMCG00012768
AMCG00012767 mRNA upstream 439486 7396579 ~ 7422773 (+) True AMCG00012767
AMCG00012763 mRNA upstream 480700 7344450 ~ 7381559 (+) True AMCG00012763
AMCG00012761 mRNA upstream 569355 7290851 ~ 7292904 (+) True AMCG00012761
AMCG00012778 mRNA downstream 71550 7936380 ~ 7958975 (+) True AMCG00012778
AMCG00012786 mRNA downstream 169264 8034094 ~ 8034399 (+) True AMCG00012786
AMCG00012785 mRNA downstream 176972 8041802 ~ 8077147 (+) True AMCG00012785
AMCG00012797 mRNA downstream 473325 8338155 ~ 8345855 (+) False AMCG00012797
AMCG00012798 mRNA downstream 577574 8442404 ~ 8443642 (+) True AMCG00012798
TU49527 other upstream 26045 7835346 ~ 7836214 (+) True G39709
TU49477 other upstream 134431 7725488 ~ 7727828 (+) True G39670
TU49223 other upstream 1344338 6517408 ~ 6517921 (+) False AMCG00012748
TU49057 other upstream 2038939 5807846 ~ 5823320 (+) False AMCG00012718
TU48986 other upstream 2309492 5552417 ~ 5552767 (+) True G39297
TU49939 other downstream 1247630 9112460 ~ 9113101 (+) False AMCG00012820
TU50138 other downstream 2572077 10436907 ~ 10444447 (+) True G40224
TU50139 other downstream 2572077 10436907 ~ 10444447 (+) False G40224
TU50140 other downstream 2572077 10436907 ~ 10444447 (+) False G40224
TU50630 other downstream 4623745 12488575 ~ 12535929 (+) True G40629

Expression Profile