RNA id: AMCG00012778


Basic Information

Item Value
RNA id AMCG00012778
length 474
RNA type mRNA
GC content 0.54
exon number 7
gene id AMCG00012778
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 7936380 ~ 7958975 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgactAGAGacaaagaAAGCACCAGAaCGCCAGCCTCCATCACGGCCTTTGATGTGAAACCaactacagaaaaaatattaccAGGCAACATGCTCGTAGTGGTTCGGGAAATGATTGACAATCTGGTCGTCAGAAAGCCGATAGCCATTATCCACGCTGAAGACGTTCCTTATGGTCTGGACACTCATCCTGGGGGTGTGTGCTTTCTGTGGTCCGCACTGATTGATCCAGTCCGAGCCATCGCTGGGCGCAGATCCGAGGGAAGAGCGAGGCACACCGCCGACAAACCAACTGCTTCCGGGGCGGCGTCCCATTTAATCTGCCAGACACAGATGCCCTGCTATTACTCTGCCATCTGGGAACAGGTAACTGGCGACAGAGCACACTGGGTTCTCCAGCCCAGCAGCCTCACAGTGGTCTCTGGCCTGCTGACAAGCGTAGCTGTATTTCGCTTCTGGCCTCCCGAGTACTGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016740 transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49569 lncRNA upstream 27214 7906257 ~ 7909166 (+) True G39737
TU49475 lncRNA upstream 201112 7714497 ~ 7735268 (+) True G39669
TU49474 lncRNA upstream 223137 7708867 ~ 7713243 (+) True G39668
TU49424 lncRNA upstream 574019 7360820 ~ 7362361 (+) False AMCG00012763
TU49358 lncRNA upstream 717921 7213745 ~ 7218459 (+) True G39586
TU49633 lncRNA downstream 98044 8057019 ~ 8132564 (+) True G39776
TU49699 lncRNA downstream 310019 8268994 ~ 8269221 (+) True G39838
TU49733 lncRNA downstream 376923 8335898 ~ 8342053 (+) True AMCG00012797
TU49788 lncRNA downstream 577258 8536233 ~ 8569891 (+) False AMCG00012803
TU49822 lncRNA downstream 707779 8666754 ~ 8667464 (+) True G39951
AMCG00012777 mRNA upstream 71550 7862259 ~ 7864830 (+) True AMCG00012777
AMCG00012775 mRNA upstream 103592 7821972 ~ 7832788 (+) True AMCG00012775
AMCG00012768 mRNA upstream 480974 7426981 ~ 7455406 (+) True AMCG00012768
AMCG00012767 mRNA upstream 513607 7396579 ~ 7422773 (+) True AMCG00012767
AMCG00012763 mRNA upstream 554821 7344450 ~ 7381559 (+) True AMCG00012763
AMCG00012786 mRNA downstream 75119 8034094 ~ 8034399 (+) True AMCG00012786
AMCG00012785 mRNA downstream 82827 8041802 ~ 8077147 (+) True AMCG00012785
AMCG00012797 mRNA downstream 379180 8338155 ~ 8345855 (+) False AMCG00012797
AMCG00012798 mRNA downstream 483429 8442404 ~ 8443642 (+) True AMCG00012798
AMCG00012803 mRNA downstream 596115 8555090 ~ 8569891 (+) True AMCG00012803
TU49527 other upstream 100166 7835346 ~ 7836214 (+) True G39709
TU49477 other upstream 208552 7725488 ~ 7727828 (+) True G39670
TU49223 other upstream 1418459 6517408 ~ 6517921 (+) False AMCG00012748
TU49057 other upstream 2113060 5807846 ~ 5823320 (+) False AMCG00012718
TU48986 other upstream 2383613 5552417 ~ 5552767 (+) True G39297
TU49939 other downstream 1153485 9112460 ~ 9113101 (+) False AMCG00012820
TU50138 other downstream 2477932 10436907 ~ 10444447 (+) True G40224
TU50139 other downstream 2477932 10436907 ~ 10444447 (+) False G40224
TU50140 other downstream 2477932 10436907 ~ 10444447 (+) False G40224
TU50630 other downstream 4529600 12488575 ~ 12535929 (+) True G40629

Expression Profile