RNA id: AMCG00012779


Basic Information

Item Value
RNA id AMCG00012779
length 4028
RNA type mRNA
GC content 0.41
exon number 4
gene id AMCG00012779
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 7955746 ~ 7960641 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTGTCTGAAGTTTGGCTCTACACCGTAGATATCAATGGTCTTTACGCCTTCTAAATGCAGTCCGCGCATGCGTGAGATAAATCAAAATGGCCGCGTCCTTTGACTGTCTCATGGATTATATTTGCTTTAGGAAAGAGAAAGTAAACCTATAACTTCTTGAAAGATCGAATACTGTTGTAATGTGCGGAGGGTATTAGCGTGGTTTAAGTTTCAACTAGAAATCATTAAAGCTCGGCTGCTCCACCagctgtatttatattgtatggGATTCATGTTTTGTTGATCATCATGCTTAATAATCTATCTGGAGAAGTGGTGTGTATTTAACGACGATTTTGTTCACTGACATTTTTGCCATTCTGCCAAGTGTGCTACAGCAACACCTGCAGACATGAGGCGGTGCAGGACTCTTCTGTGGAAGACAACACAGGGGGCTGTGAGCAGACACTCGTCGTTGTCGACAGTTTCGTGCAGAAAGGGATCAAGCGCCTCAAACGTCTCGACACACCGCGCCGACCCGCCGTCATCTCCTCCCGCCGTGGAGCGGCTGCTGGACGCGGGGGACGCGCTGTGCGGGCAGGCGAGGCAGAAACCCAGCGAGGCGTCGGTGCTCCTGTTCCCGGGACAGGGGAGCCAGTTTGTGGGCATGGGCCGAGGACTTACAAAGTATGACAGCGTCAAACAGATGTTCAGCGTGGCGGAACAAATACTCGGTTACGATTTGTTGTCCATGTGCTTGAACGGCCCCGAAGGAGAGCTGCAGAAAACCGTGCACTGCCAGCCCGCGGTGTTCGTCACCTCGCTGGCTGCGGTGGAGAGACTGAACCACGAAGCACCTGCAGCCTTGGAGAAATGCGTTGCAGCCGCTGGATTCAGTGTTGGAGAATTTGCAGCCTTGGTCTTCGCAGGATCTTTGGATTTTGCAGAAGCTCTGTATGCAGTAAAAGTGCGAGCAGAAGCGATGCAAGCAGCTTCCGAAAGAGTGCCAAGTGGGATGCTGTCAGTACTCGGGAGGCCAGAAGCGAAATACAGCTACGCTTGTCAGCAGGCCAGAGACCACTGTGAGGCTGCTGGGCTGGAGAACCCAGTGTGCTCTGTCGCCAGTTACCTGTTCCCAGATGGCAGAGTAATAGCAGGGCATCTACAGGCGCTGGAATTTTTGCAGAAGAATTCAAGGAAGTTGAATTTTCTGCGGACAACAATGTTGCCGGTAAGCGGTGCGTTCCACAGCACTCTGATGGATGAGGCAGTCGAGCCCCTGAGAGAAGTCTTAAACAAAGTGGAAATCAGGAAGCCGGAGATATCTGTTCACTCCAATGTGGATGCTAAGAAGTACATGCACAGTGGACATATTAAGCGATTGTTGCTGAAACAGCTAGTGTCCCCGGTCAAATGGGAACAGACCTTGCATGCCATTTATGAGCGAAAACAAGGCGTCGATTTCCCAGAGACTTACGAAGTGGGACCAGGGAAACATCTTGGATCAACactgaaaaaatgcaatttaaaagcaTGGAGGGCCTACAGCCATATTGATGTGATCCAAGGCTAGTTTTATACCATAATCATCTGCAGTTTTAGAGCAAGACAGGACCCTTGTGGAAGACTTTTATAATGTTTGACaatgttaaaattatgtttaacaGTGTTTAATAGAATGTGGTTATTGTTTTGAAATCAGATAAATGACATGGGTTTCATTATGCACCACTTTGTGTTTACTATGAAACGTCAGGACCAGATTGCCTGCAAACTATAAACACAAGGGTATGCTAAACCTGTTTCTGGTAAATATCTAGATGCTGTCCATGAGGAAGTGTATCCACCTCTGAACAAAATGGTTTAGAGAGTCTCTGATCAAAGCAGCAACATCAAACACACTACAGTGCACAAACACTGGTTTAAGGAATACAACACAATAGCATTTTGTATTGATGCGCATGAAAagggagaaatacattttttatcattCATAGTATACCACTGGAgagttgttattttcttttataacaCTGATGAGATGTTAAACACTCAAAAGTAACAGGCCAGAACATTCAGATGAAAACATTACCTTCAATCTAATGGCCACCAAGTCAAGAATCAGtctgagaaatgcattttgtttttccaaaatgtatttattaatttatataaaattccATTTTACAGTGAAGAAGGAAAGCCTGCTTTCTTTTTGAGTTTTGCCACAACAGAGACACCTTAAACAAGTCCAAACAagatagatttatatatatataaaaaaaaatcatttggCCGGTTAACCAGTAacagacatttatataaaaagacTGTTAACCTGTAGCAGCCTTTCTGCTATTAGTCATCTTTTTGTAAAAATTTTGAAAAGTGACCCAGCACTTGAATTTCAATACAtccaaaggaaaataaaaagaaccaagtaaaaattaaataactgtaatgatacaacaacaacaaaaaaaacaatcaaccCCTTGCTAATATTGCAATTCCAAAACCTTTTGGTCAAAGACCAGCTTGTGACCTTCAGTGCAATTGTTAGCTCATTGCCCTCCTAGAAATCAATACAGATCGCAGCAGCAAGCAACATTATAACGAGAATCCCTGCAGTCCACTTGGAATAAGCGTTCACAGGATAAAAGTTGGCAACCTGAGCAAAGATGAGAAATGGAGAGATACATATCTGCTCattagaattaattaaaatgcatattccTCTTGTACATCAGATGACTAGAGGGCAGAAGAAAGTGTTCACATACAGTATTGCcaattattttacagtgctGAGGAAATGTGTTCCCAGCTTAAATGAAACTggatttcataaaacattaactcTGTCAAGATGATATAACCTCTTACCAGCCTTCCCCATCCTCTGCATCTTGAGGCTACTGGAGCCAGGAACCTTTTAATCACTCCAAATAGGGTTGTAAGGCCTAAATGGAAACTGGGGGGTGTTCTAAAATAAGATACATAAGGAAACATTCATACTGGTTATTAAGAACTTTTGTGTTAGAAACCTCATATAATAGTAAACCCCATAACTAAATTCTTTATTAATGGTTGTAAAAATAGCATGCTAAGGTCCTAAGCTGGTGATGGATTTATATGAGTAAAGGTGGCAGTTCATACATTTGTTAGTTACTGTATCTACTCACACAGAATTGTTCGTAAGAAGCCTCAATACAGTAGGAATTTGAAAAACTGCAACATTTCATGAATTGAACTAAGATTGCTGATCTTATTCTTGACTAAATTTACCAGCTGGAGAAAATCAGGCCCAGAAACATCAGTATTAGTTAGTAAGCACTTTAATAAGCCCCACCCTTTTAATTCACCGAGAAGGCTTTGCAATTATGGTCATAGATTTACTTGAGTTGTAGTGACATAACTGCCCATGACTcatttagcatttaaaatgaaactttacCTGGCAAAAAAAATCCTCTGGGGCTCTTGAACACGTGCAGCTGTGTGCACAGGGCGCAACAGAATACTTTGGAAGCCTTCGCTGTAATGCTGACTGATCTCATCTCCTATTTCTGCTAGTTGCCGTCCTATGCGTTGAGCAGcactgtgaaattaaaaaaaacaaaaacaacaagtacAAAATAGCTCTTAAGTACTAGTATTGCCAAAAAGAACTGATCACACAGTGTGAATCCTGTTTCAAATCTAAGGCTGAGATAGGTGATAGGTGGCTTACCAGAAACATGGATTTCAGCACAGtaaatcacaaaacatttattttttatttattgcacattttgtgTTGTGAAAGAATACTGTTTAAGCTTGTTGTCCATGGAAATGAGCCATAAGTGATTGTCTATTCTGTACTGATGGAGTATAAAGCTGGAAATTGGTTTCCccctcacaatttaaaaaaatgttaataactgCATTgaggtgtgtttgttttcagggaACACATTACAGGAAACTTATATTAagattttgttattcatttagGTGAGGGATGTTGCATTAACATCAATGCACATAAActgataataaaat

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG:

id description
K00645 fabD, MCAT, MCT1; [acyl-carrier-protein] S-malonyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49559 lncRNA downstream 60020 7891577 ~ 7895726 (-) False AMCG00012782
TU49523 lncRNA downstream 127599 7827278 ~ 7828147 (-) True G39707
TU49465 lncRNA downstream 284104 7671236 ~ 7671642 (-) True G39662
TU49351 lncRNA downstream 804923 7150617 ~ 7150823 (-) True G39580
TU49319 lncRNA downstream 1057509 6897987 ~ 6898237 (-) True G39561
TU49700 lncRNA upstream 308353 8268994 ~ 8269221 (-) True G39839
TU49798 lncRNA upstream 607411 8568052 ~ 8569889 (-) True G39929
TU49823 lncRNA upstream 699807 8660448 ~ 8667024 (-) True G39952
TU49886 lncRNA upstream 939472 8900113 ~ 8901481 (-) True G40008
TU49922 lncRNA upstream 1123019 9083660 ~ 9085793 (-) True G40039
AMCG00012780 mRNA downstream 4117 7938482 ~ 7951629 (-) True AMCG00012780
AMCG00012781 mRNA downstream 27696 7908135 ~ 7928050 (-) True AMCG00012781
AMCG00012782 mRNA downstream 51291 7891489 ~ 7904455 (-) True AMCG00012782
AMCG00012783 mRNA downstream 64627 7884831 ~ 7891119 (-) True AMCG00012783
AMCG00012776 mRNA downstream 114566 7840369 ~ 7841180 (-) True AMCG00012776
AMCG00012784 mRNA upstream 406 7961047 ~ 7975857 (-) True AMCG00012784
AMCG00012792 mRNA upstream 117179 8077820 ~ 8087653 (-) True AMCG00012792
AMCG00012791 mRNA upstream 128584 8089225 ~ 8093252 (-) True AMCG00012791
AMCG00012789 mRNA upstream 132785 8093426 ~ 8113586 (-) True AMCG00012789
AMCG00012788 mRNA upstream 171790 8132431 ~ 8159884 (-) True AMCG00012788
TU49217 other downstream 1499568 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 5771583 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 6178525 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 7416155 523747 ~ 539591 (-) True AMCG00012628
TU49940 other upstream 1151800 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 4279755 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 5154252 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 9919584 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 9993422 17954063 ~ 18043587 (-) False AMCG00013042

Expression Profile