RNA id: AMCG00012781



Basic Information


Item Value
RNA id AMCG00012781
length 2764
RNA type mRNA
GC content 0.46
exon number 14
gene id AMCG00012781
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 7908135 ~ 7928050 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CACTGATACCAagatttaaaacactgcagatGTGTGGTTTTGGTGCTCTCCATCCTGGGAACTGGGGAATcttgtgtattttctgttttgtttttggatggGGGAAATTGTAAACCAGGCAAATTTCAGTGacataatgcattttcataACAACAACGAATGCCAAATCGAGCAACGCTCCTGTGCAGCAAAATTCCCGCCCGTACTCtgagggcagcagtgtggagaagTGGTGTGGGATCTGAACTCCTCTGGATCTCAGCATCAGAAGATCCCTGAACTTGGAGGGAATAGGCTTCAACTCCCAACAATGTCGGACTCTTACGATGGATCTATGACCGATGTCTCCAGTGACAGCTTCTGGGAGGTCGGTAACTATAAACGCACAGTGAAACGCATAGACGATGGGAACCGACTTTGCAACGACCTTATGAACTGCATCCACGAGCGAGCGCGGATAGAGAAGGCCTACGCTCAGCAGCTGACTGACTGGGGCAAGCGCTGGCGGCAGTTTATTGAGAAAGGGCCTCAGTATGGCACACTGGAAAGAGCGTGGACGGCACTCATGACGGAGGCGGAGAAGGTCAGTGACCTGCACATGGAGGTGAAAGGGGCTCTGATGGCTGAAGACTTCGAAAAAGTCAAGAATTGGCAGAAGGATGCCTATCACAAACAAATGATTGGAGGGTTCAAGGAAACAAAAGAAGCAGAAGACGGATTCCGCAAAGCCCAGAAGCCCTGGGCAAAGAAACTCAAAGAGGTAGAAACTACTAAGAAAGCATATCACGCAGCCTGCAAAGAAGAAAAGCTGGCAACAACAAGGGAAAACACCAGCAAACTGGATCCAAACATGAACCCCGAGACACTGAAGAAACTGCAGGACAAAGTGGAAAAGAGCAGGCAGGAAATGCAGAAGACAAGGGAAAAGTACGAGAAGTCTCTGGAGGAGCTGGATAAGTGCACGCCTCAGTACATGGAGAATATGGAGCAGGTGTTTGAGCAGTGCCAGGAGTTTGAGGACAAGAGGATTCGTTTCTTCGGTGATCTGCTGCTGGATGTGAAGAAGCACCTGGACCTCTCAACCAAACCCGCCTATGCCACAGTTTATCAGAACCTAGAAGACACTATTAAAGGTGCTGACGCTGAAGAGGACTTAAAATGGTTCAGGTCCAATCACGGTCCTGGAATGTCGATGTGCTGGCCGCAGTTTGAGAATTTTGAGCTGCCACAGAATAAGAGATGGTCCATAGTAGACTGGTCGATGGACCTGAACCGCACTCTCAGCAGGCGAGATAAGAAGAGGCCTGGGGACGGAGTGACGCTGACGGGGATCAGCCAGGCCAGGGAGCAAGCCGCCCCGCCTGCCAAGAACAACAGCAGTGTGCTGAATAGCACTGAACAGTCCGGCTCAAACCCCtttgaagaggaggaggaagaggatgaaCAGGAGCAGGAGGTGaaggaagaacaaaaaagcAGCCCTGTCAGTGAAAAAAAAGAGGAACCCAACCTGATGCCCATTCGACTGAACAAGGGTTGCAAAACGCATGTGAGCAGTGGAGAGAAAACTCAAGACTGGTCAGATGAGGAGTCTGGAAACCCCTTTTCCGCCACCGACACCAACGGCAATGGCAATCCCTTTGAGGAGGAGTCCTCCCCAGGCATCGAGGTCCCAGTCAAGGCCTTGTACGACTACGAGGGGCAAGAGCACGATGAGCTCAGCTTCAAAGCAGGTGATGAGATGACCAAGATAGGAAACGAGGACGAACAAGGATGGTGTAAGGGACGCCTGAAGGACGGCACGGTTGGCCTGTACCCAGCGAACTACGTGGAAGCAATCCAGTAAcagaaagcaaatattttaaagatatccTGTATTATTTAGCCTCCTGTTAATCTTCCCAGGGCAGAGGTGGAACAGTGAACTATGTGCAGACTGAGTACCGAAGACTGCACTCATTTCGGTCAGATCTTTCAGAGGTGCTACAACAGAATGTTGGGAGAAAATGTCTAATCAAGGTTTAACattgaatacaatataaaagcAGAAGAAACGTATTgaccaaaaacaagaaaaagaaaagaaacaatggtGAAAGGACATGGATTAAACTTTACTGTAATCCGATCAATGACAATAATCCACAATAAAGAGGTAGGATCTAGTTGTGACCATGAGCACAGAGCCTGATATTTGCCTTCATATGCTGGGCcttgtaaatatgattttatgatTGAAATAACTTTTTCTCTCAATGCACTATGTTACTAGATTAGTGCACCATGTAGAACTGTTTTGAAGTACAAAGAGGGTCATCTACTTTTGAGGTCATTATTGGAATCAATTATTCCACTGGCAAATCCATCCGAGTTAAGCTTTTTTCTGAATCGGCTCCAGCGTGTTTGGGGTTGTGAGAAGGACATCATAAGGTCAGTTGTCAGTATAGTTTTAAAccgttacatttttaatttgtagggATTGTGATTATAGTTGTTTCTATTCCTTTCTGGTAGTAGTCTTCACCATGTACAGGATTCCAGTGACAGTGTATATACACTTCCTGTACAGATTGATTGTAGATGTTTGGACTGCATTCTTTTAACAATGGAGTCTGGTGTGGGTTGTATAGTATTTGGAATTGATTCAAtgttaatcttatttttttttaaagactttgcTAATCTCTTACTGTCCTGTGCAGACAAATAATGGCTCTGTTTctcataataatatattcctgggatatatatatatatatatata

Function


GO: NA

KEGG:

id description
K20123 PACSIN; protein kinase C and casein kinase substrate in neurons protein

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU49559 lncRNA downstream 12409 7891577 ~ 7895726 (-) False AMCG00012782
TU49523 lncRNA downstream 79988 7827278 ~ 7828147 (-) True G39707
TU49465 lncRNA downstream 236493 7671236 ~ 7671642 (-) True G39662
TU49351 lncRNA downstream 757312 7150617 ~ 7150823 (-) True G39580
TU49319 lncRNA downstream 1009898 6897987 ~ 6898237 (-) True G39561
TU49700 lncRNA upstream 340944 8268994 ~ 8269221 (-) True G39839
TU49798 lncRNA upstream 640002 8568052 ~ 8569889 (-) True G39929
TU49823 lncRNA upstream 732398 8660448 ~ 8667024 (-) True G39952
TU49886 lncRNA upstream 972063 8900113 ~ 8901481 (-) True G40008
TU49922 lncRNA upstream 1155610 9083660 ~ 9085793 (-) True G40039
AMCG00012782 mRNA downstream 3680 7891489 ~ 7904455 (-) True AMCG00012782
AMCG00012783 mRNA downstream 17016 7884831 ~ 7891119 (-) True AMCG00012783
AMCG00012776 mRNA downstream 66955 7840369 ~ 7841180 (-) True AMCG00012776
AMCG00012773 mRNA downstream 120483 7757077 ~ 7787652 (-) True AMCG00012773
AMCG00012774 mRNA downstream 166104 7734831 ~ 7742031 (-) True AMCG00012774
AMCG00012780 mRNA upstream 10432 7938482 ~ 7951629 (-) True AMCG00012780
AMCG00012779 mRNA upstream 27696 7955746 ~ 7960641 (-) True AMCG00012779
AMCG00012784 mRNA upstream 32997 7961047 ~ 7975857 (-) True AMCG00012784
AMCG00012792 mRNA upstream 149770 8077820 ~ 8087653 (-) True AMCG00012792
AMCG00012791 mRNA upstream 161175 8089225 ~ 8093252 (-) True AMCG00012791
TU49217 other downstream 1451957 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 5723972 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 6130914 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 7368544 523747 ~ 539591 (-) True AMCG00012628
TU49940 other upstream 1184391 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 4312346 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 5186843 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 9952175 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 10026013 17954063 ~ 18043587 (-) False AMCG00013042

Expression Profile