RNA id: AMCG00012783


Basic Information

Item Value
RNA id AMCG00012783
length 2919
RNA type mRNA
GC content 0.45
exon number 4
gene id AMCG00012783
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 7884831 ~ 7891119 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTTGTTGGAAACCCCATGCAAAAAGGGTGTTGGTTTATTCCTGGAGCTATACTTTGGTGTCCAGGGAGAATCTTAATTCGCAGACTTGTTTTCCGGAGTCTTCCACTGTCCGGGGAGGGGAATATAAATAGTGATCGGGTTTAGACGGGTCAAAATGCCGAGCAATGAGCTGAAACAGAGGAAGAAAGGCACCAACCAAGGGAAGCAAAACGAAGACCCCCCGGAAACGGCGAAGGACGGAGGCGACCTGGCAAAAAAAGACGCCAGACGTTTGACTTGCGCAGCTGCTCCTGCGCTCGACCTGAGGACGGTGACGTGccttgtgtctctgtctgtctgcctggcGCTCACTTGGTTTGTGTTACAACAGACCACAAGGTTTGCAGAGGTGgaggaaaaatacaaactgcTGTACAGAAAGACTGCAGACATCCAGGGCCTGGAAAATGAAATCGGCAAGATTTCCAGACAGCTGGACTCCTCAGAGGAAGATCTTCAGGGGGCGCTCTCTTCAATGTCCTCGGTGACCAAGATGGAGCAAGACATCTCCTCTCTGCACACTGTCGTTAACGCCATGCAAGACAGTGAACGGTCAGTATCGCACAACATACAAAACATCAACAGGAGCTTCCAAAATGTGACCAACGTCTGGAAGGAAAGCTTGGAAGTCATCACGCAGGACATTGGAAACCTCAAGTCCGACTCCAAAGCCGCACACAACCAGATCACGGCCAAGATAAACGAGGCAGAGAAAAATGTTAAGACGATCGCGGAGAAGTTGGAGGACTTGGAGGACAGCACCAGGAGGAATTCCCGAGCCCTGGAGCGCACCGAGAACGAAGATATGGAGAGGCTGGAACAACATCTCAAATGGAACACCAAGCAGGTACTGAAATTGGAAGAGGAGCAGCAGTTGTTGGCCAACAAAGACCGTAAGCTGCTGGAGAAGATCACAGACTATGAGCCCAAAGCACAGCAATGTGAAGAGCATCTGCCCACGGTGGAGCATGCCGTTCACTCCATCCTCAGGGTCTCCTCTGACCTGGTCAACACGGAGAAGAGGATTGAGGACCTGACGATCCAGGTGTTCAACATGGAGGACAACATGCTCAAGGCCATTTCAGAGATCTTGGAGATAAAGCAGAGTCTAGATGCCCTGCAGGTGGACAATAGCATTCTAAAGCTAACAAACGATCTGGGCGTTATAAAGGAAATGGTGAAAGGGTTTGATGGAGCTAGACAAGAGCTGCCACTTGAGTTTGAAAATACCCAAGCTCTAATGAATAAGGTAAAGGACCATGCGGTGCTAACCCATATCGAAACTTTGGAGCAAGACATTGACAGGTTGAAACTCTGGTCGTCCAGCCTCACAGAGAAGAGGGAGATGCTACAAGAAAACATGACTGCGTTGTCTCTGGCTGTGGAGAAGATTGAGCAGACTACTACCTCCATCACGAAGGACGTGTCCGTAAAGGTGTCTGCTGTGAAGACTGACGTCCGGAGGATGTCTGGGCTGGAATCTGACGTTTCAGCCTTGTTATCGTCAACACACAAGCTGGAGGAGAAGGTGAAGCAAGCGGAAAAGATGATGGTTCAAAAGATCGGGGACGTTCTAGCCAGCAGCATCAACAGAATGATGGAGCTGAAGAGTTCCACCGAGAAGAACACGGAGAAGATTGACTTTCTTAAGAGGAAAGTAGCAGAATTAAAGGAAGAAGACGACAAGCTGTCACAACGGCTTTGGACCCTGGAAAGCGGGCGAGCCAGACTGTTAAAGACGGTGGCCTTCGCTGGCGACTTAAAACCCAAAGTGTTCGTCATCAGGAAGGACTTTGCTCTGCTGGAGCCTCGGGTGTCAGACTTAACTCTCAGGATCGGCAGACTGGCTTCAGATCTGCTGCAGAGGGAGCAGGAGATCGCTGTGTTAAAAGACAGTTTTACTAATTTAACCCTAGTCAAAACGGATCTTCAGAATGTAAAGCAGAAACTAAATGAAGTGCCTGAAGTTAGCGATCTGTTTgctcaaacaaaacaacctgctgaataagaacctttttgtgatttaatttaaaaacaaaaccccacaAAGTCTTGTGAGAAAGTTAAAGTGAGAATTGATTGTGAAATTGGTATCCATAGTAGTGTTCTATTCAATCTGTATGTCCATAATAATACATGGAAAGATTTGATTAGAATGGAAcgagagagaggaaaaataattcagaatcCTACTTTGCATTTTAACTATTTCAACTTACATGTTCAAAGTACCTGCTGTAGAAAATAGTTATTCGGGGACTAATCTAGtacagatttaaattatttctgagGTACTGAAAGGTCTGTGATGGTGCAGTAATGGATTTGATTAAGCTCAGCTGCATGTTCAGCTAGGTGGAATCATCACACCAAATCAGGTTGATGTGGAGTTATGTAGGGCAGTGATGTGAACTTCTGTTTCTGCAGATGATGACAGTTGAATCGAATAATGAGCTCAGGGGTCTGAATTGCCATTTTACAAGACCTCACGTTGAATGAAATCCAGATTAACCACGTGGCTGTACGGGACCGGGAATGAACTTCACAATTGTCTCATCTTTCAAGGCtgtggaattaaaaataaatatgtaaaaacatattCCTGGTTGACTTGGTTTTGTCTAAATAGAGCTGTAATCACGACAGGCTGGTTGGTGTAATTACAGAcctataattaatttaaagaacgCAAGAGGTGAAAAAATGGAAGTCAATGTTAAATAATTTTGTCTTTCataactgttaaaaatgttttgcttgtcTCTTTTGAAATGTCAGAATTTGTTTAGGGGATATGTATAGTAATGTGATGtggccttttaaaatgttttctttgcaaaatgtgtgtatggttttttatatatgtgtgtattagtTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49523 lncRNA downstream 56684 7827278 ~ 7828147 (-) True G39707
TU49465 lncRNA downstream 213189 7671236 ~ 7671642 (-) True G39662
TU49351 lncRNA downstream 734008 7150617 ~ 7150823 (-) True G39580
TU49319 lncRNA downstream 986594 6897987 ~ 6898237 (-) True G39561
TU49313 lncRNA downstream 1089098 6786456 ~ 6795733 (-) True G39556
TU49559 lncRNA upstream 458 7891577 ~ 7895726 (-) False AMCG00012782
TU49700 lncRNA upstream 377875 8268994 ~ 8269221 (-) True G39839
TU49798 lncRNA upstream 676933 8568052 ~ 8569889 (-) True G39929
TU49823 lncRNA upstream 769329 8660448 ~ 8667024 (-) True G39952
TU49886 lncRNA upstream 1008994 8900113 ~ 8901481 (-) True G40008
AMCG00012776 mRNA downstream 43651 7840369 ~ 7841180 (-) True AMCG00012776
AMCG00012773 mRNA downstream 97179 7757077 ~ 7787652 (-) True AMCG00012773
AMCG00012774 mRNA downstream 142800 7734831 ~ 7742031 (-) True AMCG00012774
AMCG00012771 mRNA downstream 154008 7725488 ~ 7730823 (-) True AMCG00012771
AMCG00012772 mRNA downstream 164938 7702378 ~ 7719893 (-) True AMCG00012772
AMCG00012782 mRNA upstream 370 7891489 ~ 7904455 (-) True AMCG00012782
AMCG00012781 mRNA upstream 17016 7908135 ~ 7928050 (-) True AMCG00012781
AMCG00012780 mRNA upstream 47363 7938482 ~ 7951629 (-) True AMCG00012780
AMCG00012779 mRNA upstream 64627 7955746 ~ 7960641 (-) True AMCG00012779
AMCG00012784 mRNA upstream 69928 7961047 ~ 7975857 (-) True AMCG00012784
TU49217 other downstream 1428653 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 5700668 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 6107610 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 7345240 523747 ~ 539591 (-) True AMCG00012628
TU49940 other upstream 1221322 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 4349277 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 5223774 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 9989106 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 10062944 17954063 ~ 18043587 (-) False AMCG00013042

Expression Profile