RNA id: AMCG00012785


Basic Information

Item Value
RNA id AMCG00012785
length 5428
RNA type mRNA
GC content 0.42
exon number 10
gene id AMCG00012785
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 8041802 ~ 8077147 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCAGGTGTCTGTTGGCGCTAGCGGAGCCGAGCTTTCCCCTGAGTCGACCCCTTTTGCTCCAGAAAGGCAGCTTCCTCGTGGTGACATCTGTCACTGAAGCAGTGCACTCTGGGttgtTCGACCGTGTTCGAGAAGAAAACCCAGAGTTCCATGAGAAAATCATTCCCATCAGCAGTGAGCTGACCCAACCTGGCCTGGCCATCAGCCCAGAGGACGTAGAGAAGCTGAAAGCCTGTATTCACATCGTCTTCCACTGCGCTGCCACTATACGCTTTGATGAACATTTGAAGCACGCCTTGCTGCTGAATGTAATCGCAACACAGCAGCTCCTGGGCCTGGCTCGGCAGATGGAGAAACTCGAGGCCTTTATCCACATCTCCACCGCCTATGCAAACTGCAACCGGAGACATATCGACGAGGTCATCTACCCGCCGCCCGTGGAGCCCAGGAAGCTCATCGAGTCCGTGGAgtGGATGGATGAGAGTATCATCCGGGACATTACCCCTCGTCTGATTGGGGATCGACCCAACACCTACACTTACACCAAAGCCCTGGCAGAGTACGTGGTCCAGCAGGAGAGCGAGAAGCTTAACATCGGCATCATCAGGCCCTCCATCGTGGGCGCCAGTTGGCAGGAGCCGTTCCCAgCAGGAAAGGGGATCCTGAGGACCATGAGGGCCAATAACGACGCCGTGGCGGATTTGATTCCAGTAGACGTGGTCATTAACCTCACACTGGCAGCTGGCTGGTACACAGCGGTGCACAGACCAAAATCAGCTCTGGTGTACAACTGCACTACAGGTGGCATTAACCCCTTCCACTGGGGGGAGATTGAATATCATGTCATGTCTACCTTCAAGAGGAACCCACTGGACCAGGCCTTCCGAAGACCCAATGCCAACATCACATCCAACTACCTGATCAACCAGTACTGGATGACTGTGAGTCACAAAGCCCCAGCCTTGCTCTACGACCTCTACCTGAGACTGTCCGGTCAGAAGCCAAGGATGATGCGCATCTTCAACCGACTCCACAAAGCCTTGATGCTTCTGGAGTACTTTAGCAATCAGTCGTGGGACTGGAACTCAGACAACATGAGCATGCTGTTGGGCCAGCTCAGCCCAGAAGACAAAAAGaTCTTCAATTTTGATGTTCGTCAGCTGAACTGGCCTGAATACATTGAAAACTACTGTATAGGCAccaaaaaatatgttcttaatGAGGACATGTCTGAGCTTCCAGCAGCTAGACAGCATCTGAAGAAGCTGAGGAACATTCGCTATGCCTTCAACACGGTCCTGCTGGTATTTATATGGCGCATCTTCATCGCCAGGTCGCAGATGGCCCGTAACATCTGGTACTTCGTGGTCAACCTCTGCTTTAAgttcctgtcctatttcaggGCATCCAGCACCTTACGGCACTGAAACCTCCTCCCGAGCCACACCCACCTCTCTACATCCAGGACAAAGCTCGTCCCGACACAGCCAGCCCACTCCTCTGGGTTACCAGCACCCCATCTCACTTCAGAAGCTGTGTGTTCCTGTCAGCCTTCTAGTCTAAACAGCCAAGTGAGCtctagaaaaagaaaaaaatatatataaaaacggAAGGATGGTCAGCCATTAAATGACTAAATTTGAAGTCAAAATGTTCCTTAAAAAGTTGGTTCAGTACTCGAATTCTTGGTCTTCTACGTCATACAGCAAAAACACCTCCACTTCATTTTTGATACCCATTCTTTTTCTAATGAAGGCTTTCCTGATAAACAGGTGGTGGGGggttaaaacaacaaaacaaatatgcaacAAATCCCATTGTATGGTGGATAGTTTTGTGCATCTGTAGCGATGTCTTTCGTCTAAATACAGTTACAATGCCTAGAAATTTGGTCACAATGTGTGGGATACTTAAATAATGATGTTTTCCTCATTAATTGTACATGACGTTTCATGcttgaatttattatttttcttttttggtttgatttctaTGTATTACATGATCATCTCCTCCAGTTTGTACTGAAAACAAGCTACtaaccttttaatttaatcattctAATATTGTATCTGCAAACACAATTTTCCTGTTGGTGTTTGCTATGGAGGGGGGCAGTGTTATGTATAAATCTGAATTAGActatctgtaaatatttaaaagctatcttatattattcttatataGAGAACCAAACAACAtggaaagatgtttttttttcttttctgttgatGGATTCTTCAGTGAGTGGGAGAACAGCTTAAAAGCTTTTTATGGTCACCTCATATTTAcctcttattttctttatggaGAAAACGAACTGAATCCGAATCCGAATTCAGAAAGCGGTTAGCGTAACACTAGTCCAGTTTGCAGCACAACTGCAGAGACCATGATTGGTGGGAATTGTAGACCACCAATGATATTTAAAGGAAGGAGGTCTAAAATTAGCACTGTTCGGGGTCTGTGAAAGCAGATGTTTTAGTTCAGGTATTTGGGGGTGAAGGAGCAGTTTAATACTTCACCAATACAGAGGCTCAATGCAGAGagaacataatacaattacacattccCGGTGTATTGGATTTATAGCTCAAGAATACTTTGGACTACTGCTGCTTACATATCCACACTGAGACTGGTCAGTACAATGCTTTAGATCTTCTTACACTTACCAAGGCCGCCCAGTTTTCTCGCTGCTCCAAAGAATCTGATGAGATAATGCAAGTGTTATTTGTACACAAAACAGGGCCTGTACGACAAAACACATCCTCTTCAGTGTTCGGTTTAATTTTGTTATGGAATAACCAGTTGTTCCTTGCTGTATGATTCACAATCAGACCAGTGCACTATGAACTCAGATTGGTCACcaatgtgtttgaaaaaagtcaaatctataTGTATGTTATTGCCATTTGTTCCACGTTTTAACAGCTGTGTCCTTCACTGTTGCTCCTCTGAAAACCCTTCCATTTCCCCCTGCTTGGCAATGtcaataaactgaagagaaaTCGTGTTAGTGTGCCAGCCATCATGCTTCATCAACCCCATATACTGTCAGTGATGAGACCTGAGCACGTGTAGTCTTTATCCTAACATGAAGACTGAACACATTGCAGCAGCAGTGTTTTCACCTCAGAAATTCCTACTTGAAGTATTTCCCAGGGCTACATTGATGCTGTACTAGTATTAGATccggggttaaaaaaaaaaagttctttGCACTGGAATGATACCATGTATTAGTCATTCTGTTtgtaattgaattaatgaaatACTAAGCAAAACCAGATTGAAAGCGATTCTAATAAATACTATCCAAATGCTTTGTGAAACCCTGCcataaaacaaaagtgcaatcTATGCCCTTCATTAAGTATGACAATGTAGTAGAAGTAGGAATTTTGAACACAAATGGccaattcacatttaaatgagAAGTCATGGTTGGCTtcgttttcttcttcttcttcttcctttgtGTTCATACTTTTGCTTTCCCCCTGTGCACAGGTTTTCTatgcataaaaaaataccaaaatgatttattttcctggaactgtaaatatttgtattattccaaATGTTCAGACTAGATTAGTGAGCCTAGTCTTTGCTGTTAGAATAGGTTCAGCACTTTGTTGGGCGTCTTACAGCATCCTAAACCTACCGTACCATTTTTTACAGCATGTTTGTGATCTGAGAGATTACTGTCTGCCTAGGATGGGTTTGAAAGAGTGGATTTATCCCCATGCTTTGAAATTGATCTTGTGATTTTAGACAATAATACATGACATGATCAGTTTCtacagaacaaaactaaaagtgCCAAACCCACTACAGGAAGCATGTGAATACCAGGGTATCTGTGCCCTAGATTTTCAAGCTTCAAGTTCCTTGTGATTCTACAAGGACCTATCACTGCCCTTTTGTACATGTTCTCCCCTCTGTACTAATGACCAGACTTCCTATTACCACCAAAAAGCCCAAATTGTCCAATACTACCCATTTATGTTGGAAGAGTTATAAtcctatatataatatattgtaacaagaGCCATTTTAACAGGAAAGTAACCAGCCAGGTGTGATGAATGGAGATAAACCAATGACATGGGCGACTGTGATTGTAGCTCACGAGGTGAATATCTTTGACTGCACGAcagcaaaacaaagaataagaacataaaaacaataatggaaAGGTAGAAAAACTTAACTAAAATCAGGAAACAGTTGAAGATTAGAGGAACGTTACTCCTGCATTCTTGTATTTTGGTACAACAAACACCAAGAGCAACAAAATACAGGACACACACTCCCAAAAGCTACAACCATGTAAGGCAGGGTGCAGTGTAAACTTATCGCAGTGCTataatgctgtgtttttatatcGAATGTTAGAATGGGCTCCTTTGTAATAATAAGTTAACTGTCTACTCTTCCTGTTCACCCTTTCGTAACGAATTCAGACCACTGCTCAGGTGAGATCACCCAGATCCACAGCCTTCCAGTCTGCAGACAACCGACTGTTTttttgagtttcttttttcgttgttgctttgtttttatatacttaGGATGAATGCATTTTGAATGGACAGTTAAAAACAAGAGGTCAATGTTATACACACAGCTCGACATGCCTGGAGAGTCCAGTAAAGCACATGTCCGTCATGTAAGCATCTGCTGAGATGAGAACTACGACAAACAGCATTCCAGACATATCCGTTTTCTATGACGTGTTAGAGAAGCACCGACTGTCTTAAGATCCATCAAACTGGAGCAAAATGAAATtcagaaagcatttaaaaacaaccgTTTCTGCCAGTGTTCTGAACCGTCCAGATTAATACTGCCATGGTTAGCCAATTACTGGTatccaatttaaaatgcacaccCTCCAGTAGATTTGCCTTGCAGATTTTACagcaaactattttttttatttccagcaaAGTGGAATTGAGCGTGCTCAGCTGTGGCATGCATGCTGATCACATTAGAGACGTGTGTTTTAACATGATTGGGCTTCGATTTAAGTTTGCTTCAAAAGGCAACCTCTTAGACTATGTAAATGCATGCACTAAACAGATGAAGTGGACtcttattacaaataaaaattactCCATATTCAGTCTATTGATTGCATGAATTTATACTTAATCTACCTTATCTGAATGCACAATCCTCCAGTATTAATGAAGAAAGTGTTCATGGAAACAATTCCATCAGGGCTTATTTTATCTTCATCCAAACTAACGAaaccctttcttttttttgtatgtgggatattcttttttattctattttcacGGGGGGATTTCACATTGAATCTTTCATTGATAAAAGTTGTCTGATTACAGAACAGTGTCTCATCTCTAGAGGAGATGTctctgaagaaataaaaactcaataaaaaca

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0080019 fatty-acyl-CoA reductase (alcohol-forming) activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49569 lncRNA upstream 132636 7906257 ~ 7909166 (+) True G39737
TU49475 lncRNA upstream 306534 7714497 ~ 7735268 (+) True G39669
TU49474 lncRNA upstream 328559 7708867 ~ 7713243 (+) True G39668
TU49424 lncRNA upstream 679441 7360820 ~ 7362361 (+) False AMCG00012763
TU49358 lncRNA upstream 823343 7213745 ~ 7218459 (+) True G39586
TU49699 lncRNA downstream 191847 8268994 ~ 8269221 (+) True G39838
TU49733 lncRNA downstream 258751 8335898 ~ 8342053 (+) True AMCG00012797
TU49788 lncRNA downstream 459086 8536233 ~ 8569891 (+) False AMCG00012803
TU49822 lncRNA downstream 589607 8666754 ~ 8667464 (+) True G39951
TU49901 lncRNA downstream 973940 9051087 ~ 9053819 (+) True G40022
AMCG00012786 mRNA upstream 7403 8034094 ~ 8034399 (+) True AMCG00012786
AMCG00012778 mRNA upstream 82827 7936380 ~ 7958975 (+) True AMCG00012778
AMCG00012777 mRNA upstream 176972 7862259 ~ 7864830 (+) True AMCG00012777
AMCG00012775 mRNA upstream 209014 7821972 ~ 7832788 (+) True AMCG00012775
AMCG00012768 mRNA upstream 586396 7426981 ~ 7455406 (+) True AMCG00012768
AMCG00012797 mRNA downstream 261008 8338155 ~ 8345855 (+) False AMCG00012797
AMCG00012798 mRNA downstream 365257 8442404 ~ 8443642 (+) True AMCG00012798
AMCG00012803 mRNA downstream 477943 8555090 ~ 8569891 (+) True AMCG00012803
AMCG00012807 mRNA downstream 494311 8571458 ~ 8607377 (+) True AMCG00012807
AMCG00012811 mRNA downstream 718021 8795168 ~ 8799438 (+) True AMCG00012811
TU49527 other upstream 205588 7835346 ~ 7836214 (+) True G39709
TU49477 other upstream 313974 7725488 ~ 7727828 (+) True G39670
TU49223 other upstream 1523881 6517408 ~ 6517921 (+) False AMCG00012748
TU49057 other upstream 2218482 5807846 ~ 5823320 (+) False AMCG00012718
TU48986 other upstream 2489035 5552417 ~ 5552767 (+) True G39297
TU49939 other downstream 1035313 9112460 ~ 9113101 (+) False AMCG00012820
TU50138 other downstream 2359760 10436907 ~ 10444447 (+) True G40224
TU50139 other downstream 2359760 10436907 ~ 10444447 (+) False G40224
TU50140 other downstream 2359760 10436907 ~ 10444447 (+) False G40224
TU50630 other downstream 4411428 12488575 ~ 12535929 (+) True G40629

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000066_02074798_02093516.mRNA True 1386 mRNA 0.55 10 CI01000066 2074798 ~ 2093516 (-)