RNA id: AMCG00012787


Basic Information

Item Value
RNA id AMCG00012787
length 495
RNA type mRNA
GC content 0.55
exon number 2
gene id AMCG00012787
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 8245202 ~ 8251415 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGGTTCACGCACAAGAGAAGGTCTCGGCTCCTTTCTGTCTCCCTGTCCTGTCGGCTCCGGGCAGGGGTGTCCTCTGCTATGTCCTCCTGTGTCTCGCCTGCGCTCTGTGCTACAGCAACTCTCTGCCCGGGGAGTTTGTGCACGACGACGTGTGGGCTATCAGCAACAACCCCGACGTGAGACCCGGCTCCGGCCTGAGGAGTATCTTCTTCAACGACTTCTGGGGCAAGAGGATGGCCGACAACACCAGCCACAAGTCCTACAGACCTCTGTGCATCCTCACCTTCAAGTTGAACATAATACTAGGTGGGATGAAGCCCTTCCACTTCCATGTGGTGAACGTGTTCTTGCACTGTGCTGtgacagccctgttgatgtACACTTGTGAGAGGACCGTGTTTGATGACAGTCGCCTGGCGTTCCTCACGGCTCTTCTGTTTGCCGTCCATCCCATCCATACAGAAGCAGTAAGTTTTCAATGGTGTCCATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49559 lncRNA downstream 349476 7891577 ~ 7895726 (-) False AMCG00012782
TU49523 lncRNA downstream 417055 7827278 ~ 7828147 (-) True G39707
TU49465 lncRNA downstream 573560 7671236 ~ 7671642 (-) True G39662
TU49351 lncRNA downstream 1094379 7150617 ~ 7150823 (-) True G39580
TU49319 lncRNA downstream 1346965 6897987 ~ 6898237 (-) True G39561
TU49700 lncRNA upstream 17579 8268994 ~ 8269221 (-) True G39839
TU49798 lncRNA upstream 316637 8568052 ~ 8569889 (-) True G39929
TU49823 lncRNA upstream 409033 8660448 ~ 8667024 (-) True G39952
TU49886 lncRNA upstream 648698 8900113 ~ 8901481 (-) True G40008
TU49922 lncRNA upstream 832245 9083660 ~ 9085793 (-) True G40039
AMCG00012790 mRNA downstream 56839 8181514 ~ 8188363 (-) True AMCG00012790
AMCG00012788 mRNA downstream 85318 8132431 ~ 8159884 (-) True AMCG00012788
AMCG00012789 mRNA downstream 131616 8093426 ~ 8113586 (-) True AMCG00012789
AMCG00012791 mRNA downstream 151950 8089225 ~ 8093252 (-) True AMCG00012791
AMCG00012792 mRNA downstream 157549 8077820 ~ 8087653 (-) True AMCG00012792
AMCG00012794 mRNA upstream 22539 8273954 ~ 8298974 (-) True AMCG00012794
AMCG00012793 mRNA upstream 50713 8302128 ~ 8306274 (-) True AMCG00012793
AMCG00012795 mRNA upstream 62358 8313773 ~ 8325929 (-) True AMCG00012795
AMCG00012796 mRNA upstream 80521 8331936 ~ 8337762 (-) True AMCG00012796
AMCG00012801 mRNA upstream 90444 8341859 ~ 8374472 (-) True AMCG00012801
TU49217 other downstream 1789024 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 6061039 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 6467981 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 7705611 523747 ~ 539591 (-) True AMCG00012628
TU49940 other upstream 861026 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 3988981 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 4863478 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 9628810 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 9702648 17954063 ~ 18043587 (-) False AMCG00013042

Expression Profile