RNA id: AMCG00012791


Basic Information

Item Value
RNA id AMCG00012791
length 826
RNA type mRNA
GC content 0.46
exon number 7
gene id AMCG00012791
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 8089225 ~ 8093252 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCTGGACGGGGAAGGTAGACGCTTCTCCTTGCCACGCTAGGGGGCGCTGGTCAAAAGAAAAGGAGGTTTATTTTCCTGTGCCGACTGTCcaatcttttctctctctgtctgtggtgGCGGAGAAAGGTTAGGGGTTAGGCAGAGTCAGTGCCGACAGTGTCTTCCCAGGAAGAGTGTGTTTTTACAACGACTTCTGCAAGGAATCTGCTTCtttaagagttttttttctttttcttttgtacaaTGATTGTATTACCGTCTTGTATTTAAACTGGCCTCTCGGATCTGAGACGCATGCAACCAAGGTGGAATATATGAAGGAAGGCGTGGAGGACTCCAATGAAGATGAGGCGACTGAATCGGAAGAAAGCCCTCAATTTGGTTAAAGAGCTGGATGCATTCCCTAAGGTCCCTGACAGCTACGTGGAGACCACAGCTAGTGGGGGGACAGTGTCTTTGATAGCTTTTTCAGCCATGGCTTTGTTGGCGCTGTTGGAGTTCTTTGTGTATCGAGATACCTGGATGAAGTACGACTACGAAGTTGACAGAGATTTTTCTAGtaaattaagaataaatattgatattacaGTTGCAATGCGGTGCCAGtATGTTGGTGCAGATGTGTTAGACTTAGCAGAAACCATGGTAACTGCTTCAGATGGTCTCCAATATGAACCAGTTGTGTTTGACCTGTCTCCCCAGCAAAGGCTTTGGCAAAGGACGCTCATTCTCATACAGAACAGGCTAAGGGAAGAGCATTCGCTGCAAGATGTCAtattcaaaactgttttaaaaggGGCCCCCACCGCCTTGCCGCCTAGGTAG

Function

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20366 ERGIC2, ERV41; endoplasmic reticulum-Golgi intermediate compartment protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49559 lncRNA downstream 193499 7891577 ~ 7895726 (-) False AMCG00012782
TU49523 lncRNA downstream 261078 7827278 ~ 7828147 (-) True G39707
TU49465 lncRNA downstream 417583 7671236 ~ 7671642 (-) True G39662
TU49351 lncRNA downstream 938402 7150617 ~ 7150823 (-) True G39580
TU49319 lncRNA downstream 1190988 6897987 ~ 6898237 (-) True G39561
TU49700 lncRNA upstream 175742 8268994 ~ 8269221 (-) True G39839
TU49798 lncRNA upstream 474800 8568052 ~ 8569889 (-) True G39929
TU49823 lncRNA upstream 567196 8660448 ~ 8667024 (-) True G39952
TU49886 lncRNA upstream 806861 8900113 ~ 8901481 (-) True G40008
TU49922 lncRNA upstream 990408 9083660 ~ 9085793 (-) True G40039
AMCG00012792 mRNA downstream 1572 8077820 ~ 8087653 (-) True AMCG00012792
AMCG00012784 mRNA downstream 113368 7961047 ~ 7975857 (-) True AMCG00012784
AMCG00012779 mRNA downstream 128584 7955746 ~ 7960641 (-) True AMCG00012779
AMCG00012780 mRNA downstream 137596 7938482 ~ 7951629 (-) True AMCG00012780
AMCG00012781 mRNA downstream 161175 7908135 ~ 7928050 (-) True AMCG00012781
AMCG00012789 mRNA upstream 174 8093426 ~ 8113586 (-) True AMCG00012789
AMCG00012788 mRNA upstream 39179 8132431 ~ 8159884 (-) True AMCG00012788
AMCG00012790 mRNA upstream 88262 8181514 ~ 8188363 (-) True AMCG00012790
AMCG00012787 mRNA upstream 151950 8245202 ~ 8251415 (-) True AMCG00012787
AMCG00012794 mRNA upstream 180702 8273954 ~ 8298974 (-) True AMCG00012794
TU49217 other downstream 1633047 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 5905062 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 6312004 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 7549634 523747 ~ 539591 (-) True AMCG00012628
TU49940 other upstream 1019189 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 4147144 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 5021641 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 9786973 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 9860811 17954063 ~ 18043587 (-) False AMCG00013042

Expression Profile