RNA id: AMCG00012795


Basic Information

Item Value
RNA id AMCG00012795
length 2856
RNA type mRNA
GC content 0.52
exon number 20
gene id AMCG00012795
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 8313773 ~ 8325929 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGTTCCAGTCCGGCGAGGGTATAAAAAGAAACCAATTGACAATGGTACAGCTTTCCCCTTCCCCCGTCCTCGATCTCTCTCCAACGTCTGACCACTCCGAGGAGGTGAAAGTGAAGCATGGGAGTCCCAAGCTGGAGGGCACTCCTGTCCTCAGCTCACTGCAGCTGGCCCTGGCTTCATCCACAACCACCTACCAAGGCTATGAAACCTACATTGAGGATGGGCTCATCTGTTTAAAGCACAAGATCCGCAACATTGAAAAGAAGAAGCTGAAACTAGAAGACTATAAGCAGCGTCTCAAGGATGGAAATACACTTAATGAAGACCAGCTGGAAGCTGTGGAGAAGTATGATGAGGTTGTGCATAACCTGGCTTTTGCAAGAGAGCTCCAAAAGACCTTCAGTTCCCTCAGCCAAGATCTGCTGAAGGCCCAGAGGAAAGCAGTGCGGCGAGAGCAGGTGATGAAGATGGAGGCAGATAGGAAGCGACTGCGTATGGTTCTTCAGCTCCATTACATCTTTCAGAGCCTACAGCAGGAGCATGTGAGGAAGGACTTCCGCAGTGGCCTCAATGGGGCGCCCTTCCATTCTACCCGCGAGCTCCAGTACCTCCTGAACTTCTCTAAGCTGGTGGGGTGTAACAGAGATGAGAGCATGAGCTTGGAAGATCAAATGGAGCAGGCATCCGCTACTTACTGGGAGTTGCTAGAAGGAACAGACAAACCTGTGGCTGGTACTACCTACAAGCACATGAAGGAGCAACTTGCCAAACTGCTGGACTGTGGCTACTTTGACCACATTCCTGTCCCTCACAGTGAAGGTCTAGAAGAAGCTGTGGCAGAAGTAGTAAAGGCAGAACCGCCAAAAGATCGTTCCAGGATTCCAGATCTACCTGGAATGCCAAAATCAGCATGTGAAGTCCCAACAAGAGAGTTTCTTAACAGACGCTACTTGCCTGAAACAGACTTCAGCGCCAAAGAGAAGTTGGCCAAGCAACCTCTGTCACAGGCCTGGAAGAAGGAATTCCTGGCCCTGAAGCAGCAGGAGCCACCTGACTCCTGGGACATGGATTATGTGGAAAAGCCAACACCTCCCCAGCAGGCTGTGTTGAAACCCTGCAGATCAGCAGCAGTATTTGTGCCCAAAGAGCCAGAGGAGGTGAAGAGGCCTGCCACAGAGCCAAAACAAAGGCGTGAACGGAAGTCCAAGACTGAGCAAGAAACTAAACctGTACCAAAGTCTGACCCTCCCCCAGTAGCAGTGTTCAATTCCCCATCGTCCCTCCCAAAAGATCCAGTGCTGCGTAAACAGAAGCTGGAGGATCTGATGGATCAGATTCAGGGGTCATTTAGCTTTATGCAGGATTCGGTTCTTGAAGGAGAGGGTTCGCCCACCAGTGGAACTCCCAGAAAACCGCATTCTGCACTTGTAACATCTACACCAATAGTGCAGAGAGAAGTAAAGAAAAGCCAAGCGGACCTCCTCCCGAAAGCCTTGCAGCCTTCTTCATCCCCTGTTGCCCGTGTTCCCATTTGCCCCAAAACCACCTTGACCAATGGAGAGCACTCTTTGAATGACTTGGCAATGGACCTCTCTGCGGATGAATCTGCCCATGTGCCCATCTCTCTGCCAAACAAAAGTGTCCCCACCATCAGCATATCTACCTCCCCTCCCCGTCCAGGGCAGACATTCTCTTTGCCTCCCACTAACTGCACCTTAAGCATGACAGCAGCACCATTTCAGACCATGCACACTGTTTTCAAGGTCAATGCCCCCTTGCCACCTAGAAGTGATTCAGATTCGAAAGCGGATTCAAGTGGATTTTCCGATACTTACAACCTAAGCTATTCCACAGCCAGTACTCAGACTCCCCCTGAGAGCTCCCTTCAGCCCTCAGGATTGCTCGATCAGGATGATCTACAGCCAGCTACTTCATATCAGTCTGAATGCCCAGTAAGCAATGGCTGTCAGACTTACTTGTCTCCTGGACCTCAAGTTGGTGGCTTCTCTCGCTCCACCCAGCCCTACTACACTCGAGGGGCAGTCAGAGGAGGGTTTGACTGTTACAAAAATGGCATCCAGTCCCCTGGTGGAAGCTTCATTCCTCAGACCTATCCTACTAGAGAGTGTACGACTATTCTGTATGGGACCAGGGAAACTGGGTACCAGCAGAATTATAAACGAGGAGGAGGACCTGGTGGCCAACGCATTAATTCAAGAGCTACCTGGAGCGATTCTTCCCAAGTGAGCAGTCCAGAGCGGGATAATGAGACTTTTGCGAGTGTGGACTCTGGCCAGACTGGCTCTCGCTGCATTACTCCAATCGATGTCCCAGTGACCACCCAGGGGCCTACCCTCATGCCCGTGCACGTCTATCCCCTCCCCCAGCAGATGCGAGTCGCCTTCTCTGCTGCCCGCACTGCCAACTTCGCTCCTGGAACCCTGGACCAACCCATTGTTTTTGACCTCCTCCTCAACAACCTTGGAGAGACCTTTGACATGCAGATGGGAAGGTTCTCCTGTCCGGTCAATGGCACCTATGTCTTCATCTTTCACATACTCAAGCTGGCAGTCAACGTGCCCTTGTACGTCAACCTGATGAGGAATGAGGAAGTGATGGTGTCTGCCTACGCAAATGATGGAGCGCCGGACCACGAGACGGCGAGCAACCATGCCGTGCTGCAGCTGTACCATGGAGACCAGATCTGGCTGCGACTGCACAGAGGTGCCATCTATGGAAGTAGCTGGAAATATTCCACGTTCTCGGGCTACCTTCTGTACCAGGATTGAAATCCTCTCTGACTCAATCACCatagggataaaaaaaaaaacacagggcgggggggggggggg

Function

GO:

id name namespace
GO:0090263 positive regulation of canonical Wnt signaling pathway biological_process
GO:0048814 regulation of dendrite morphogenesis biological_process
GO:0031346 positive regulation of cell projection organization biological_process
GO:2000055 positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification biological_process
GO:0051094 positive regulation of developmental process biological_process

KEGG:

id description
K18744 CAPRIN2, EEG1; caprin-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49700 lncRNA downstream 44552 8268994 ~ 8269221 (-) True G39839
TU49559 lncRNA downstream 418047 7891577 ~ 7895726 (-) False AMCG00012782
TU49523 lncRNA downstream 485626 7827278 ~ 7828147 (-) True G39707
TU49465 lncRNA downstream 642131 7671236 ~ 7671642 (-) True G39662
TU49351 lncRNA downstream 1162950 7150617 ~ 7150823 (-) True G39580
TU49798 lncRNA upstream 242123 8568052 ~ 8569889 (-) True G39929
TU49823 lncRNA upstream 334519 8660448 ~ 8667024 (-) True G39952
TU49886 lncRNA upstream 574184 8900113 ~ 8901481 (-) True G40008
TU49922 lncRNA upstream 757731 9083660 ~ 9085793 (-) True G40039
TU50011 lncRNA upstream 910971 9236900 ~ 9257451 (-) True G40115
AMCG00012793 mRNA downstream 7499 8302128 ~ 8306274 (-) True AMCG00012793
AMCG00012794 mRNA downstream 14799 8273954 ~ 8298974 (-) True AMCG00012794
AMCG00012787 mRNA downstream 62358 8245202 ~ 8251415 (-) True AMCG00012787
AMCG00012790 mRNA downstream 125410 8181514 ~ 8188363 (-) True AMCG00012790
AMCG00012788 mRNA downstream 153889 8132431 ~ 8159884 (-) True AMCG00012788
AMCG00012796 mRNA upstream 6007 8331936 ~ 8337762 (-) True AMCG00012796
AMCG00012801 mRNA upstream 15930 8341859 ~ 8374472 (-) True AMCG00012801
AMCG00012799 mRNA upstream 58848 8384777 ~ 8392408 (-) True AMCG00012799
AMCG00012802 mRNA upstream 87115 8413044 ~ 8438978 (-) True AMCG00012802
AMCG00012800 mRNA upstream 118067 8443996 ~ 8452153 (-) True AMCG00012800
TU49217 other downstream 1857595 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 6129610 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 6536552 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 7774182 523747 ~ 539591 (-) True AMCG00012628
TU49940 other upstream 786512 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 3914467 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 4788964 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 9554296 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 9628134 17954063 ~ 18043587 (-) False AMCG00013042

Expression Profile