RNA id: TCONS_00009300


Basic Information

Item Value
RNA id TCONS_00009300
length 1498
RNA type mRNA
GC content 0.51
exon number 4
gene id XLOC_004696
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 22258962 ~ 22304841 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGATGATCCTAAGGGGAAAAAAGTGGGGAGAGAAAAAGATATGTACCTTAGGGAAGAACCTCAGTAAGAGGGAGGGAATCAGAGGACGAGTAGGAgcgtgtgtgcgagtgtgtgaaaGAGACACTTACTCTCCTAACTACTACTGGAAGACACACACTTTTCTCACCCAACTCAAAGCAGCAGCAAACCTTggagaattgttttatttttgttttttcgcgaacccccccaaaaaaaattccTAATTATTCTCTCAAGCATCCATCTTTGCCTTGCCGGGATTTAATTTTCACCCCCTCTCTAGGAATCCTATGTACTGATCAATAGACCCTTTCCATCCACACAAGACATACCTCATGGATTTGTACCTGGTTGGATTTCTCATGTGCATGTGGTTCTCCAGCTCTCGGGTGCTTGGAGGCTATCCCATCTGGTGGTCCCTGGCCCTTGGGCAGCAGTACTCATCCATTGGATCCCAACCCATCCTGTGTGGCTCCATACCTGGCCTGGTGCCAAAACAGCTGCGCTTCTGCCGCAATTACATAGAGATCATGCCCAGTGTAGCGGAAGGAGTCAAACTGGGTATCCAGGAGTGTCAGCACCAGTTCCGTGGTCGCAGGTGGAACTGCACCACTATCAAGGACAGTCTAGCAATATTTGGACCAGTGCTTGATAAAGCTACAAGGGAATCTGCATTTGTTCATGCGATTGCCTCAGCTGGAGTAGCATTTGCAGTAACCCGTTCATGTGCAGAGGGGACCTCCACTATGTGTGGCTGTGACTCCCATCATAAAGGCCCACCGGGAGAAGGATGGAAGTGGGGTGGCTGCAGTGAAGATGCTGAATTTGGGGTTTTGGTATCTCGAGAGTTTGCAGACGCTCGTGAGAACCGGCCAGATGCTCGGAGTGCCATGAACAGGCACAACAATGAGGCAGGACGAATGACCATATTGGAGAACATGCACCTGCGCTGTAAATGCCATGGGCTGTCAGGCAGCTGTGAAGTGAAGACGTGCTGGTGGGCGCAGCCTGACTTCAGACTGTTGGGGGACTACCTGAAAGACAAGTACGACAGCGCCTCTGAGATGGTGGTGGAGAAACACCGGGAGTCCAGAGGCTGGGTGGAAACACTACGAGCCAAATACGCCTTCTTCAAGCATCCCACTGAGCGAGACCTGGTATACTATGAGGGATCACCCAACTTCTGCGAGCCAAACCCAGAGACGGGCTCATTCGGCACCCGTGACCGTGCCTGCAACGTGTCGTCGCACGGCATCGAAGGCTGTGACCTGCTGTGCTGTGGCCGTGGCCATAACACACGGACAGAAAAGCGCAAAGAGAAATGCCACTGCATCTTCCACTGGTGCTGTTACGTTAGCTGCCAGGAATGTGTGAGGGTCTACGACGTACATACATGTAAATAAGCACAGCGGGTCCAGAAAGAAAGGGACTAGTGGACATTAAGCAAGAGAATGAGagactgaggaaaaaaaaaca

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0006928 movement of cell or subcellular component biological_process
GO:0043010 camera-type eye development biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0000902 cell morphogenesis biological_process
GO:0090596 sensory organ morphogenesis biological_process
GO:0030182 neuron differentiation biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0120036 plasma membrane bounded cell projection organization biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0048592 eye morphogenesis biological_process
GO:0048593 camera-type eye morphogenesis biological_process
GO:0048863 stem cell differentiation biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0035904 aorta development biological_process
GO:0048880 sensory system development biological_process
GO:0040011 locomotion biological_process
GO:0061564 axon development biological_process
GO:0007389 pattern specification process biological_process
GO:0048666 neuron development biological_process
GO:0050793 regulation of developmental process biological_process
GO:0048667 cell morphogenesis involved in neuron differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007409 axonogenesis biological_process
GO:0060284 regulation of cell development biological_process
GO:0001654 eye development biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0022008 neurogenesis biological_process
GO:0030902 hindbrain development biological_process
GO:0048699 generation of neurons biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0150063 visual system development biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005840 ribosome cellular_component
GO:0017134 fibroblast growth factor binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0005007 fibroblast growth factor-activated receptor activity molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function
GO:0019199 transmembrane receptor protein kinase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-081003-1 Predicted to enable cytokine activity and frizzled binding activity. Acts upstream of or within cloaca development and thalamus development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including basal plate midbrain region; brain; midbrain hindbrain boundary neural tube; posterior neural tube; and presumptive diencephalon. Human ortholog(s) of this gene implicated in tetraamelia syndrome 1. Orthologous to human WNT3 (Wnt family member 3).

Ensembl:

ensembl_id ENSDART00000131175

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010926 lncRNA upstream 239192 22017946 ~ 22019770 (+) True XLOC_004695
TCONS_00010924 lncRNA upstream 459566 21757817 ~ 21799396 (+) False XLOC_004694
TCONS_00010925 lncRNA upstream 459566 21790979 ~ 21799396 (+) False XLOC_004694
TCONS_00010922 lncRNA upstream 1151975 20806915 ~ 21106987 (+) False XLOC_004689
TCONS_00009291 lncRNA upstream 1372480 20806897 ~ 20886482 (+) False XLOC_004689
TCONS_00009303 lncRNA downstream 119112 22423953 ~ 22427055 (+) False XLOC_004697
TCONS_00010735 lncRNA downstream 313547 22618388 ~ 22619122 (+) True XLOC_004701
TCONS_00010928 lncRNA downstream 732606 23037447 ~ 23040091 (+) True XLOC_004707
TCONS_00010929 lncRNA downstream 1149588 23454429 ~ 23605722 (+) False XLOC_004711
TCONS_00010930 lncRNA downstream 1149617 23454458 ~ 23605722 (+) False XLOC_004711
TCONS_00009298 mRNA upstream 510954 21697540 ~ 21748008 (+) True XLOC_004693
TCONS_00009297 mRNA upstream 570875 21684239 ~ 21688087 (+) True XLOC_004692
TCONS_00009292 mRNA upstream 705325 21298317 ~ 21553637 (+) False XLOC_004690
TCONS_00009301 mRNA downstream 99267 22404108 ~ 22445061 (+) False XLOC_004697
TCONS_00009302 mRNA downstream 103011 22407852 ~ 22444387 (+) False XLOC_004697
TCONS_00009305 mRNA downstream 255226 22560067 ~ 22573297 (+) True XLOC_004698
TCONS_00009306 mRNA downstream 271563 22576404 ~ 22604311 (+) False XLOC_004699
TCONS_00009308 mRNA downstream 275738 22580579 ~ 22599067 (+) False XLOC_004699
TCONS_00009299 other upstream 464846 21794002 ~ 21794116 (+) True XLOC_004694
TCONS_00009295 other upstream 821504 21437346 ~ 21437458 (+) True XLOC_004691
TCONS_00009286 other upstream 1566949 20691358 ~ 20692013 (+) False XLOC_004688
TCONS_00009270 other upstream 1759882 20498983 ~ 20499080 (+) True XLOC_004679
TCONS_00009249 other upstream 2354547 19866998 ~ 19904415 (+) False XLOC_004671
TCONS_00009304 other downstream 138788 22443629 ~ 22444772 (+) True XLOC_004697
TCONS_00009307 other downstream 273563 22578404 ~ 22578530 (+) True XLOC_004700
TCONS_00009313 other downstream 353082 22657923 ~ 22661380 (+) False XLOC_004703
TCONS_00009319 other downstream 373112 22677953 ~ 22745783 (+) False XLOC_004704
TCONS_00009330 other downstream 616636 22921477 ~ 22932021 (+) False XLOC_004706

Expression Profile

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