RNA id: AMCG00012798


Basic Information

Item Value
RNA id AMCG00012798
length 753
RNA type mRNA
GC content 0.54
exon number 3
gene id AMCG00012798
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 8442404 ~ 8443642 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGCTGCTAGCCAGATGTAAACGGGTGGTTTTACCCAAGATACGTACCCGTACCAAGACGGAGAAACGTCCATATCATTCGAGTTGTGAAGCAGGAGAAATTGAGCGGTTTATTattgaaaacacagaagtggTGAAGGAAGACCACATGACCCCAGAGATACAGCTGAGACTGTTCACCCCGACCTGCCGCTTCTGGCACGCAAGACCGGAGCTGTGGCCCTTCACCGACCCGTACTGGGCTATTTACTGGCCCGGGGGACAAGCTTTGGCCAGGTACCTGCTAGATGAGCCGGCGGTCTCTCATGGCCAGAAGGTGTTGGATCTGGGATGCGGATGCGCCGCCTCAGCGATTGCTGCTAGACTGGCTGGCGCTTCACTGGTAGTGGCCAACGATATAGACCCTGTTGCAGCTATTGCCACCAAGTTGAATTGTGAACTGAACGGTCTGCAGCCCATCGCGGCTGTCACCGCGAACTTGATTGGGAAGGAGCCGGATAGCTGGGATCTTATCCTGCTTGGAGACATGTTTTACGATGAGACGCTTGCGGACAGTCTGCACTCCTGGCTCAGAGACTGCATCAGGACTCGTGGCACACGGGTCCTAATCGGGGACCCAGGCAGGACTCAGTTTGAGAGTCACAGTATCAGACAGCAGCTGCTCAAGCTTGCAGACTATGAGCTGCCTGACTCAGTCAAAGAGGATAACTATGGACTTACAGTGAGCACTGTGTGGCACTACCAGCCCGAg

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K22843 ETFBKMT, METTL20; ETFB lysine methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49733 lncRNA upstream 100351 8335898 ~ 8342053 (+) True AMCG00012797
TU49699 lncRNA upstream 173183 8268994 ~ 8269221 (+) True G39838
TU49633 lncRNA upstream 309840 8057019 ~ 8132564 (+) True G39776
TU49569 lncRNA upstream 533238 7906257 ~ 7909166 (+) True G39737
TU49475 lncRNA upstream 707136 7714497 ~ 7735268 (+) True G39669
TU49788 lncRNA downstream 92591 8536233 ~ 8569891 (+) False AMCG00012803
TU49822 lncRNA downstream 223112 8666754 ~ 8667464 (+) True G39951
TU49901 lncRNA downstream 607445 9051087 ~ 9053819 (+) True G40022
TU49921 lncRNA downstream 640432 9084074 ~ 9085689 (+) False AMCG00012818
TU49926 lncRNA downstream 647672 9091314 ~ 9093846 (+) True G40041
AMCG00012797 mRNA upstream 96549 8338155 ~ 8345855 (+) False AMCG00012797
AMCG00012785 mRNA upstream 365257 8041802 ~ 8077147 (+) True AMCG00012785
AMCG00012786 mRNA upstream 408005 8034094 ~ 8034399 (+) True AMCG00012786
AMCG00012778 mRNA upstream 483429 7936380 ~ 7958975 (+) True AMCG00012778
AMCG00012777 mRNA upstream 577574 7862259 ~ 7864830 (+) True AMCG00012777
AMCG00012803 mRNA downstream 111448 8555090 ~ 8569891 (+) True AMCG00012803
AMCG00012807 mRNA downstream 127816 8571458 ~ 8607377 (+) True AMCG00012807
AMCG00012811 mRNA downstream 351526 8795168 ~ 8799438 (+) True AMCG00012811
AMCG00012810 mRNA downstream 379855 8823497 ~ 8844351 (+) True AMCG00012810
AMCG00012815 mRNA downstream 410439 8854081 ~ 8872158 (+) True AMCG00012815
TU49527 other upstream 606190 7835346 ~ 7836214 (+) True G39709
TU49477 other upstream 714576 7725488 ~ 7727828 (+) True G39670
TU49223 other upstream 1924483 6517408 ~ 6517921 (+) False AMCG00012748
TU49057 other upstream 2619084 5807846 ~ 5823320 (+) False AMCG00012718
TU48986 other upstream 2889637 5552417 ~ 5552767 (+) True G39297
TU49939 other downstream 668818 9112460 ~ 9113101 (+) False AMCG00012820
TU50138 other downstream 1993265 10436907 ~ 10444447 (+) True G40224
TU50139 other downstream 1993265 10436907 ~ 10444447 (+) False G40224
TU50140 other downstream 1993265 10436907 ~ 10444447 (+) False G40224
TU50630 other downstream 4044933 12488575 ~ 12535929 (+) True G40629

Expression Profile