RNA id: AMCG00012803


Basic Information

Item Value
RNA id AMCG00012803
length 2501
RNA type mRNA
GC content 0.43
exon number 7
gene id AMCG00012803
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 8536233 ~ 8569891 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAGGCGGCAGCATCCCGCCGCATCATCCGGAGCATCAATGAGCTAAAGCCTATTACGTCACTTTGTCCGGATCTGATTTGCTGAAGGTCATCGCTCTCAACCGAGCACGTCTTCTcattcatttgattttttttttcttctgatctTTCCCCAATTAACATATCGCTACCACCGGGGTATCTGTGGTTGTTGTACGAGGCGTCAGGATGGCAGAGAGCGAGGCAGAAACGCCAAGCACCCCGATAGAGTTTGAGAGCAAATACTTCGAGTACAATGGAGTGAGGCTTCCTCCCTTCTGCCGGGGGAAGATGGAGGAGATTGCTAACTTCTCTCTCAGGAGTAGTGACATATGGATTGTCACCTACCCCAAATCAGGGACCAGTCTGCTACAGGAGGTTGTGTACCTGGTGAGCCAGGGGGCCGACCCAGACGAGATTGGGCTGATGAACATCGACGAACAGCTCCCTGTGTTGGAGTACCCACAGCCAGGGCTTGATATCATCCAGGAGCTGACATCTCCCCGTCTGATTAAAAGCCATCTTCCATATCTGTTCCTGCCTACAGCCATGCACAATGGAGAGTCCAAGGTGATCTACATGGCCAGGAATCCCAAAGACCTGGTGGTGTCCTACTATCAGTTCCATCGCTCCCTCCGCACCATGAGCTACAGAGGGACATTTCAGGAGTTCTGTCGCCGGTTTATGAATGACAAGTTGGGTTATGGATCCTGGTTTGAGCATGTGCAGGAATTCTGGGAGCACCGTATGGACTCCAATGTGCTCTTCTTGAAATATGAAGACATGTACAAGGACCTTGCGACCCTGGTGGAGCAGCTGGCCAGGTTCCTGGGGGTGTCTTGTGACAAGGCCCAGCTGGAAGCCATGGTGGAGAGCTGTAACCAGCTGATTGAGCAATGCTGCAACTCGGAGTCCCTCTCAATCTGCAGGGgGAGAGTTGGCTTGTGGAAGGACATCTTTACTGTATCGATGAATGAGAAGTTTGATGCAGTTTACAAACAGAAGATGGGCAAGTCAGACCTCAGCTTTGATTTTAGCTTGTAAAGACGTCCTGCTGCATGCCACACTGGAAACCACAGACTTTTGCTGTCGCTTCCCAATGTCTTCTATCAACTCGCTGGATCAACTGGCTATTCCATGTAATTCAACAGCACCTAGATTTTCCGATAGAGACTTGTGGATCTCCAGTTGCTGTCTGATCTTAATGTATAATCAATCATTCATTCTTTCtgttctattctattctattcaaTTCTAATCACGTGATGGTATAATGGCAGAAACAGAAAGCTTTGTATAAACTAATGGCACTACCATGAATACAAATTCTCTGGAGGTACAATTTCTAGTCGTGTAGTGGTCTccacatgtattaaaaaaaaactatatttaacaGAACCAAACCATAATAAACAGTCAGCTTAGTCAAAGAATGTGCTGGAAGAATCTCAGGGTTCATCTGTTGTAGTGAAAAAGTGTAATGCTGAAAATATCCCCATCACTGAGACCTGTTTCTCACTACCTTTTTGGAACTGTTTGAGTGGGAAGGTTGACTTAggaaagccaaaaaaaaaaaaaaacatgatttcattTGGAAAAGCAAATGGGCTTTGCATGTTAGAAGTGAATGAgggtgtttgtttctctttaaagTGTTTGTGGTCAGTTTTATATTGACCACATTgctgtcatatatatatatatatatatatatatatgtatatgcagaGCAGCTGATTTCTTCGATTTTTTGTTcgttctgtgtttttgtttattttattcatgaaatgCAGCTATTAAAGGGAACATATCACAATCCTTTGCCCGTtgtgttttccagttttaaCTATATCTCAGCCTTAACGCAGAATCGTTAAGGCAAACCCACTGACACTCAATGTTTTACACATCTTGTCATCTTTCCTCTGTAggactttaaataataatgaaacatctcccttaaaatgtaattgaaccacataaaagaaaaaaagtaaatgtccaGGGAGGCAGTTGTGACAAAGTCCTGTAGAGGAACAGATGGGATGAGCCACATGTTGAACAGACCTTAGTTATAACTTTGGAAATGAGAAACTGAGAGAGGAACCTCATCTTTGGATGTATCAATACAATGGAGAGCAGGGCCATTCCCACATCAAAGCCTACTGCTATTCATTTGTATTGCTCCTGCATTGACTACCAAACAGCTTGTAAGTCCCCACCCGCCACCATTACTGCACAGTTAGACACTTTTGAATGTCTTTATTGTGTGGATGTACAAAGCTTTGGATCGATATCATGTACGGGACGTTTCAAATGGCATGACTAGAGTATAATAGCACTTTCTCAGTTATACAGTCTCTTTTACTGGCACACAGcttatgttatatttttatattgtttggtTGTTGTATAAATTCCTATGCACTGTACTTTCCATGCTTGCTTTGCTGATTTATTAATAAAGATGTGTCTTCAGTCTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K11823 SULT4A1; sulfotransferase 4A1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49733 lncRNA upstream 213037 8335898 ~ 8342053 (+) True AMCG00012797
TU49699 lncRNA upstream 285869 8268994 ~ 8269221 (+) True G39838
TU49633 lncRNA upstream 422526 8057019 ~ 8132564 (+) True G39776
TU49569 lncRNA upstream 645924 7906257 ~ 7909166 (+) True G39737
TU49475 lncRNA upstream 819822 7714497 ~ 7735268 (+) True G39669
TU49822 lncRNA downstream 96863 8666754 ~ 8667464 (+) True G39951
TU49901 lncRNA downstream 481196 9051087 ~ 9053819 (+) True G40022
TU49921 lncRNA downstream 514183 9084074 ~ 9085689 (+) False AMCG00012818
TU49926 lncRNA downstream 521423 9091314 ~ 9093846 (+) True G40041
TU50015 lncRNA downstream 694987 9264878 ~ 9265093 (+) True G40119
AMCG00012798 mRNA upstream 111448 8442404 ~ 8443642 (+) True AMCG00012798
AMCG00012797 mRNA upstream 209235 8338155 ~ 8345855 (+) False AMCG00012797
AMCG00012785 mRNA upstream 477943 8041802 ~ 8077147 (+) True AMCG00012785
AMCG00012786 mRNA upstream 520691 8034094 ~ 8034399 (+) True AMCG00012786
AMCG00012778 mRNA upstream 596115 7936380 ~ 7958975 (+) True AMCG00012778
AMCG00012807 mRNA downstream 1567 8571458 ~ 8607377 (+) True AMCG00012807
AMCG00012811 mRNA downstream 225277 8795168 ~ 8799438 (+) True AMCG00012811
AMCG00012810 mRNA downstream 253606 8823497 ~ 8844351 (+) True AMCG00012810
AMCG00012815 mRNA downstream 284190 8854081 ~ 8872158 (+) True AMCG00012815
AMCG00012817 mRNA downstream 469431 9039322 ~ 9043541 (+) True AMCG00012817
TU49527 other upstream 718876 7835346 ~ 7836214 (+) True G39709
TU49477 other upstream 827262 7725488 ~ 7727828 (+) True G39670
TU49223 other upstream 2037169 6517408 ~ 6517921 (+) False AMCG00012748
TU49057 other upstream 2731770 5807846 ~ 5823320 (+) False AMCG00012718
TU48986 other upstream 3002323 5552417 ~ 5552767 (+) True G39297
TU49939 other downstream 542569 9112460 ~ 9113101 (+) False AMCG00012820
TU50138 other downstream 1867016 10436907 ~ 10444447 (+) True G40224
TU50139 other downstream 1867016 10436907 ~ 10444447 (+) False G40224
TU50140 other downstream 1867016 10436907 ~ 10444447 (+) False G40224
TU50630 other downstream 3918684 12488575 ~ 12535929 (+) True G40629

Expression Profile