RNA id: TU49788


Basic Information

Item Value
RNA id TU49788
length 1392
lncRNA type sense_over
GC content 0.34
exon number 2
gene id AMCG00012803
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 8536233 ~ 8569891 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCTGTACactatttgtcttttcttttaaactaggTATTCACCAATCTAGAtactatgttttttgtttctacaTATATTACTTAATAGTTTCTTTACATACCACATCATTTTGGATGgtttgggaaaaaaacagatatcCCGGATGAAAGTCTGATCCAGAGCTGCATTTACATATTAGTGCAGTGAATTGCAATCATTGTGATAATAACAATCCTAGTAACCTCTGATTGAAAAAGTGTGCAATTATAGTGTTCTTCTGGAGAAATTAATCTCAGAAGGCTACTTTACATGTAAAACTTGGAAGGctgctgtgtttaaaacaaacaaaaacactcattacatattttaacaatataaacattCTGTTCCTTCATCTCATTCAGCTGCAGGTCATGTATCTAACCATGCCacgaatacatacataatttagtTATGAACAAATATAGTAGACTGTGTAAAGTGCAGGCGTTTGGGCCACACTGATGTACTGAAAGTACTGAAATGACTTAAAGACCCTAGAAAAAAAGTCCTGGATTAAATCAGAACTCTGAAAAAGGAACTGACATCCAagacatgaaatatatatatatatatatatatatatatatatatatatatatatatatgtatatgcagaGCAGCTGATTTCTTCGATTTTTTGTTcgttctgtgtttttgtttattttattcatgaaatgCAGCTATTAAAGGGAACATATCACAATCCTTTGCCCGTtgtgttttccagttttaaCTATATCTCAGCCTTAACGCAGAATCGTTAAGGCAAACCCACTGACACTCAATGTTTTACACATCTTGTCATCTTTCCTCTGTAggactttaaataataatgaaacatctcccttaaaatgtaattgaaccacataaaagaaaaaaagtaaatgtccaGGGAGGCAGTTGTGACAAAGTCCTGTAGAGGAACAGATGGGATGAGCCACATGTTGAACAGACCTTAGTTATAACTTTGGAAATGAGAAACTGAGAGAGGAACCTCATCTTTGGATGTATCAATACAATGGAGAGCAGGGCCATTCCCACATCAAAGCCTACTGCTATTCATTTGTATTGCTCCTGCATTGACTACCAAACAGCTTGTAAGTCCCCACCCGCCACCATTACTGCACAGTTAGACACTTTTGAATGTCTTTATTGTGTGGATGTACAAAGCTTTGGATCGATATCATGTACGGGACGTTTCAAATGGCATGACTAGAGTATAATAGCACTTTCTCAGTTATACAGTCTCTTTTACTGGCACACAGcttatgttatatttttatattgtttggtTGTTGTATAAATTCCTATGCACTGTACTTTCCATGCTTGCTTTGCTGATTTATTAATAAAGATGTGTCTTCAGTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49733 lncRNA upstream 194180 8335898 ~ 8342053 (+) True AMCG00012797
TU49699 lncRNA upstream 267012 8268994 ~ 8269221 (+) True G39838
TU49633 lncRNA upstream 403669 8057019 ~ 8132564 (+) True G39776
TU49569 lncRNA upstream 627067 7906257 ~ 7909166 (+) True G39737
TU49475 lncRNA upstream 800965 7714497 ~ 7735268 (+) True G39669
TU49822 lncRNA downstream 96863 8666754 ~ 8667464 (+) True G39951
TU49901 lncRNA downstream 481196 9051087 ~ 9053819 (+) True G40022
TU49921 lncRNA downstream 514183 9084074 ~ 9085689 (+) False AMCG00012818
TU49926 lncRNA downstream 521423 9091314 ~ 9093846 (+) True G40041
TU50015 lncRNA downstream 694987 9264878 ~ 9265093 (+) True G40119
AMCG00012798 mRNA upstream 92591 8442404 ~ 8443642 (+) True AMCG00012798
AMCG00012797 mRNA upstream 190378 8338155 ~ 8345855 (+) False AMCG00012797
AMCG00012785 mRNA upstream 459086 8041802 ~ 8077147 (+) True AMCG00012785
AMCG00012786 mRNA upstream 501834 8034094 ~ 8034399 (+) True AMCG00012786
AMCG00012778 mRNA upstream 577258 7936380 ~ 7958975 (+) True AMCG00012778
AMCG00012807 mRNA downstream 1567 8571458 ~ 8607377 (+) True AMCG00012807
AMCG00012811 mRNA downstream 225277 8795168 ~ 8799438 (+) True AMCG00012811
AMCG00012810 mRNA downstream 253606 8823497 ~ 8844351 (+) True AMCG00012810
AMCG00012815 mRNA downstream 284190 8854081 ~ 8872158 (+) True AMCG00012815
AMCG00012817 mRNA downstream 469431 9039322 ~ 9043541 (+) True AMCG00012817
TU49527 other upstream 700019 7835346 ~ 7836214 (+) True G39709
TU49477 other upstream 808405 7725488 ~ 7727828 (+) True G39670
TU49223 other upstream 2018312 6517408 ~ 6517921 (+) False AMCG00012748
TU49057 other upstream 2712913 5807846 ~ 5823320 (+) False AMCG00012718
TU48986 other upstream 2983466 5552417 ~ 5552767 (+) True G39297
TU49939 other downstream 542569 9112460 ~ 9113101 (+) False AMCG00012820
TU50138 other downstream 1867016 10436907 ~ 10444447 (+) True G40224
TU50139 other downstream 1867016 10436907 ~ 10444447 (+) False G40224
TU50140 other downstream 1867016 10436907 ~ 10444447 (+) False G40224
TU50630 other downstream 3918684 12488575 ~ 12535929 (+) True G40629

Expression Profile