RNA id: AMCG00012806


Basic Information

Item Value
RNA id AMCG00012806
length 2470
RNA type mRNA
GC content 0.48
exon number 14
gene id AMCG00012806
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 8499637 ~ 8532718 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGTGTAGCTGGCACACGTGGGATCATGGAGACGTCTGAGGTAGAGAAAGACACCCAAGAACAGAATAAAGAAGAGGAAGAGTTCAAACACTTCATAGACCTGCATGGCCCTGCTCTTAAATCATCAAGAATACCCCCAATATACTGGAAGAGTCTGCATTACAAACTTGCCAATGAGATATTTGATGCCGGCCATGTGTTCGGGATCATGCAAGTGGAGCAGGTGGAGGATGAGCAGGAGGCCGAGGATGGGGAGTCTGATGAAGAGGctcaggaggaagagagaaagaagcCTAACCCAGGGGTGGAGCTGGTGTCCAAAGTCCTTGTGACCAGTGAAAATGGCCTCCAGGCAACTGACCCCACTAGCGTGTTCCTGATTGATCATGCCTGGACGTACCGCGTGGAGAGCGCCAGGCAGCAGCTGGAGCAGGTCCCGGGTCTCTTGCAGCGTATGGCCAGTCTGATGCACTTTGATTTCCATGGAGAGTACCCTGACGAGGACGTGGTGGAGCAGGTGTTGGAGGAGATGTGGAAATACAACCAGACCTACCAGCTGTCTCAGGGGACTGCAGAGGAGAAGGTGCCCGTGTGGTACATCATGGATGAGTTTGGCTCCCAGGTGCAGCACTCAGATGAACCCACGTGTTCCATGGCCCCTTTCTTCTACATGCCAGAGCAGATCGCCTACACCATCCTGTGGCCCCTACAGGACCTGGCCAATGGAGACGAAGTGACTCGAGATTACGCCTATGGAGAGAGTAATCCTTTGATCAGGAAGTGTAGACTCTTGCCCTGGGAGCTGGCAGACATGCGAGCAATAAGTCCCTTCACTCCTGAGCCATCTGATCTTTACTACCAGTCCATCTTCCAAGAAAACAAGGAGACGCTTCCACGTCCAACCGAAGCCCAAGTTTACCCCAAAGACAAGATCTTTAAGGTTTACACAGAAATGAGACAGGTCCTGGCCAATCTGAAACACCCCCAGTTTGTGTTCACAGACAAGGAGGAGGAGGCTGACATCCTCATGTTGTACTCCCACATTAAAGACTACAGGAAGCTGAGTGAGGAACGCCCACATGTCCTTCTAAACCAGTTCCCCTGCGAGACTATGGTGACCGTGAAAGACTGCTTAGCATCCGTGGCCAGGAGAGTCGGGGGCACGGAAGGGGCCAAATGGTTACCGAGGACTTTTAACCTCAAAACAGAGTTACCACAGTTTATCAGCCACTACCAGCAAAACCAGGAGAGAGGACAGGACAATCATTGGATCTGTAAACCTTGGAACCTGGCACGGGGTCTGGACACTCACATCACTAATAACCTGAACTATGTCATCCGCCAAAGGGAGAGCACTCCAAAGGTGGTATGCAAGTACTTGGAGAAGCCAGTGCTGTTTGAGAGGCAGGAGGTCGGCCCAGTGAAGTTTGACATCCGGTACATCGTCCTCCTGCGCTCAGTGCAGCCCCTGCAGCTCTACGCATATAATGTGTTCTGGTTGCGCTTCTCCAACAGGCCATTCTCTCTGGATCATTTTGATGACTACCAAAAGCACTTCACTGTGATGAACTATACAGAAGGAGCCCAACTTAAGCAGGTCCATTATGATGACTTCATTCCTCAGTTTGAGAAGCAGTACCCAGAATACCCCTGGAAGGACGTCCAGGAGGGCTTGTTTCAGTCTTTTGCCGAGCTGTTCCAGGCTGCCTGTAGTAGGCCAGCCCCCTACGGCATCTGTGCCTACCCTGCTTCCAGAGCCGTCTATGCTATTGACCTCATGCTGAAATGGGATGCAAATGCTGAAGGGGAAAGGATCATGCAGCCTCAGATTCTGGAAGTCAATTTCAGTCCTGATTGTGCCAGAGCCTGCAAATACCACCCCAGCTTTTACGACGATGTCTTTAGAACTCTGTTCCTGGACGACACACAGGGTTGCCCCGTGACTCGCATCGTATGACCCCCAGGGGTCAAAGAAGAGGAGGAACACTGCCTCTTGAATTCTCTTGAGATCTGTGGGTTTAATTTGAATGATCACATCTTTCATTCCAGTAACACTTATGACACAGAAAGGGTTGGATTTTCCAAAACTGGTTAAGGACTTACTTAAGTACCTATATTTATTAGAGCTACTGTGACATGCATATGGTTTGTCTCATTAAAAATGGTTGCAAAAAAACTCAGAATCTGAAAAGATTTTATCTGCAAGATTTTATAAACTGACTCAAGAGTAAATAATTTATCAACTTTGGAAAACCCTAAAAGCTttctcttctttatttttaatactgatCTCAACTTACAAGCAgagaaataactggaaaatgttattaaatgtgtgctGTTATACCCTGCAAGTACCATTAAAACTCTGATTGCAAAGACATGTTTCTTCTGTTATCTCGGTACTCGCATCACTCTGgaatttcaaatgtaaacagtATGCAGAGGTGATAAATTGCTTGGGATGAAG

Function

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process

KEGG:

id description
K16609 TTLL12; tubulin--tyrosine ligase-like protein 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49700 lncRNA downstream 230416 8268994 ~ 8269221 (-) True G39839
TU49559 lncRNA downstream 603911 7891577 ~ 7895726 (-) False AMCG00012782
TU49523 lncRNA downstream 671490 7827278 ~ 7828147 (-) True G39707
TU49465 lncRNA downstream 827995 7671236 ~ 7671642 (-) True G39662
TU49351 lncRNA downstream 1348814 7150617 ~ 7150823 (-) True G39580
TU49798 lncRNA upstream 35334 8568052 ~ 8569889 (-) True G39929
TU49823 lncRNA upstream 127730 8660448 ~ 8667024 (-) True G39952
TU49886 lncRNA upstream 367395 8900113 ~ 8901481 (-) True G40008
TU49922 lncRNA upstream 550942 9083660 ~ 9085793 (-) True G40039
TU50011 lncRNA upstream 704182 9236900 ~ 9257451 (-) True G40115
AMCG00012804 mRNA downstream 20458 8464160 ~ 8479179 (-) True AMCG00012804
AMCG00012800 mRNA downstream 47484 8443996 ~ 8452153 (-) True AMCG00012800
AMCG00012802 mRNA downstream 60659 8413044 ~ 8438978 (-) True AMCG00012802
AMCG00012799 mRNA downstream 107229 8384777 ~ 8392408 (-) True AMCG00012799
AMCG00012801 mRNA downstream 125165 8341859 ~ 8374472 (-) True AMCG00012801
AMCG00012805 mRNA upstream 3450 8536168 ~ 8553089 (-) True AMCG00012805
AMCG00012809 mRNA upstream 79524 8612242 ~ 8616101 (-) True AMCG00012809
AMCG00012808 mRNA upstream 105219 8637937 ~ 8650040 (-) True AMCG00012808
AMCG00012813 mRNA upstream 134599 8667317 ~ 8681599 (-) True AMCG00012813
AMCG00012814 mRNA upstream 205452 8738170 ~ 8747560 (-) True AMCG00012814
TU49217 other downstream 2043459 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 6315474 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 6722416 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 7960046 523747 ~ 539591 (-) True AMCG00012628
TU49940 other upstream 579723 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 3707678 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 4582175 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 9347507 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 9421345 17954063 ~ 18043587 (-) False AMCG00013042

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000066_00711133_00728657.mRNA True 855 mRNA 0.50 6 CI01000066 711133 ~ 728657 (-)