RNA id: AMCG00012807


Basic Information

Item Value
RNA id AMCG00012807
length 3840
RNA type mRNA
GC content 0.50
exon number 26
gene id AMCG00012807
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 8571458 ~ 8607377 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atataatatatacttttaaattttATTGAAGATCATATATGCTACTCAAGTACAAGTGACTGGTctctgtatgtttgtatgtagtGCAGGAACTGACCAGCAATGAGCAGTTCACTGGAGCCTCATCTGGCCGATCTGCGCCCCCTGTCTCGAGGGATCATGATGGTCCCAAGACCCCAGTCTGCCATTGAGAGAAATGCATCACGAAACTCCAGGCAAACCTCCATCAGGTCTGAATCAAGCACTTCAGTTAAATCTGTCCCTGACGATAAGCTCTCGGTGGGTGACGTTGAGAAGATCATTCGGCAAAGGACATTGGAGAAGCAGGATGACTTGCGACGAGCTTTTCAAGCATACGACGCAGAAGGCAATATGACCGTGACTGCAGGGGAATTCCATCGTGTCATTGAAACCTTCCTCCTGCCGCTAACACAGTCGCAGTTTGAGGCAGTGTTGAGTAAGATTGCTAGTAATTTAAAGAACATCACAAGGGCTTTCCGTCTCTTTGACTACAATCAGGATGGCCAGATTCAGCAGCATGAACTTAGAAGAGTCCTGGAGAGTTACTGCTTCCCAATGACCAGTAAGGAATTCAGCAAGCTTTGGTCTCACTACAGCCCGAATAACTCTAACACTCTGGCCTACAAGGAGTTTCTGGAGAAGCTTGGCCTCAGTTGTGAAAGATTGAGAAAAGCACTGCCAGAGAGCACTCAGCTAGACGAAATCCAGGTGATCTTCCAGAAAAAAATGCAGTTGAACTACGAGAACATCAGGAGAGCCCTGCTTGCATTTGATGTGACCCAGAGTGGCTTTGTGTCCCTGGAGGACCTGCAATCTGTCCTCAGTAACTTTCTCTTCGCAATGAGTGAGGCCACCTTTCAGGGCCTGATGAATTGCTTCGGGTTTAAAGCAATGGGACGAATTGCTTGGGACCAGTTCCTCACTAAGTTTAGAGGCACTGTGGCTGAGGGCAATGGACAGACTTTGCCTATGAGACCGACTCATAGGGTGAATCCAGTCCTTGGAGTGTATGAGCCACCCAGCACTGGACACATCCTGAAGACACTACAGCACCATGTGCAGGCCGCCTACCCTTCCTTGAAAAAGGCCTTCCTGGTGTTCGATGATAATCGGGACGGGAAGATCACTCGCGCTGAGATGCGTCGGATTGTGGAAAGTCTGACATTCAGGTTGACAGACGAGCAGTTTAAAGAGCTCATGATTTTACTGGATCCTGAGCACACTGGCGTCATTAGCTACCATCACTTTCTGGAGTTGTTTGAAATGAAGGAGACCCTGCTGCAGCGAGTAAAGGAGGCTCTTGGACATCCCCACTCAACAGCAATGGGAACTGTCAGTCGGGAAAAGCTCAGGGAGGTCCTGCACACTTACGGGTTGCCTGTCTCTGACGACCACTTCCACAAACTGTGCCAGCCCTGTATAGACCCTGCATCTGGCGGAGTCGCTTACAGGCAGTTTCTTCAGAACCTGGGGGTTCCCCTGCCGTCTGAAGACTCCGTCGTTTCGGAGGCTGCTGGGAAAAATGAAGGGAGGAAAAGCAGGGGCTCCTCTATAAGgacAAAACAGCCCAAAAAAGAGCAAGTTAATCATCCTAAAAGCAGGGCAGTAGAGGAGATTATTATGAAAAAACTCAACGAGCACCTGGCGCAGCGGGAAATTACCATTCAGGAATGTCTCCAGACTTCCCGCAAAGAGCCTAGCGGAAGAGTTTCGAAAAGAGATTTGAGGAAgGTTCTGAATGACTGCAGAATTATCCTCGATGATAAACAGTTTCAAATGCTCACAGACACGCTGGGTTTTAGGAACGGAGGACTTCCTGACTCCGAATTCTTTGCCAGAGTTGAAGGTCACAGAGCCACCAGCGCAAACACAACCCTTCGGTGCAGCTCAGCTCACGGTGTCAATGGAAAACAGGTCCACTACATCACAGCAGAACAGTGCATCAGCCAGTTAAAAGATAACATGAATGAAAATTTTGAGaATCTCTACGCTGCGTTCCGCCAGATGGACAGGAATCGCGATGGCATCGTCACCATGCGTGACTTCCGAGACCTGTTTGACAGCTTCACGTTCATTATTAAAGAGAAGGAGTACCAGCGCATGATGGGCCTTCTGGGACTGCAGCCTGGATCCACTTTAAACTACCCCGAATTCCTCCTCCTATTTCAGAAGCCTGAGGGACAACCTTGGTTGGATTCAGTACACAGGCCAAATCAGACCCTGCAAGCCAGTCCCGATCTTGTGTGTGAACAGGTGCACAGTTACCTTGTGAAGAAAGTCCAAAGCAGATGGCACGACCTAGCAAAGGCATTTTGTGAGTTTGATCAAGCTGGCCAAGGCTTCCTCTCTCACGCGGAGTTCCTAGAGACGGTGGGCGTGGAGTTTGCTCCCGCTGACAATGGGCCGAGCAAGCGGATAGTGGAGGAGAATTACAGCACCTTACTGGAGCACCAGAGCAAACAGCAACAGAAGCACATGGAGATTGCAGACAAGCAGGCACACCAGACCCACATGCTTCAGACAGCACAGCTTGAGCAGGAGATCAAGGACATCATCCGCGATTACTACCAGGATTTCAGCACAGCCTTTACGAAGCTGGATATGAACAAGGATGGCTATGTAACAGTCCAGGATTTGCACCGAGTTCTCCAGGACCACAGCTATCAGGTGGAGGAAGTCCAGTTTGTACATCTGCTCAACAGGCTGGGAATCAATACAGATGACAGCAAACTGTCTTATTTTGACTTCCTGCGAGCTTTTGATGATGGTAGAGCCTCGAAATACGGCCCCAGAACACAACCCACTGATCCCACTGAGAGCTGCGTGGGACTCAGCCCAGAAAAGgccttgtttaaaataaaacaaacagtgagAGCTTCATATGACACACTTCAGAAGGCCTTTGCTGCTTTTGATAAGAGTGGCAGCGGCGCCGTGCCAACCCTGGAGTTCCGCCAGACTTCAGAGTGGCTAGAGGAGGTTCAGAAGGTCAGCCGGCCGGTCCAGACTCCCACTCGGACTCTCTCTATGAAGGACATCTTGAGCCGCATCCAGGAAGTGGTCTCCACACGCATATATACCATCAGCCAGGAGATCATAGATATGGACTACGCTCATATTAATtttgaaaACCTGTGGAACCAAATGCCAGTCAACGACTTTGGGAACCTGGACTACCAGCAGTTTCTAAAGAGGTTCAGTGGAGAGCCCTGTAAGAAACGGCCAAGCTCCTCTGGGAGAGAAAGCCCCATGAAAACCCCATCTCCTTCCGCTCTAGAGAGAACCCTATCACCCAGTAGACGGCCCAAAACTGCATCCTGCTTGGGCAGCCCATCCAAGaaagtgaagaaaaacatttacaaatccTGGAGGGAGATCCAGAAGAAGTGCAGGGAGCTGGACTCTGAGGGACTCGGAGAAATCAGCGTGTCCAGATTCTTGGcTGTACTGGAGAACTGTGATATCCAGATGACCCAGGGAGAGTTTGAACAACTGGCCCAAAAATACGACATTAAGAACAATGGCAAATTCTCCTACCCTGAGTTCCtgcgtcattttgttctcacgCTGAAGCCACTGGAGGCAAAGCCACTGGAGAGGGCGAGAGTCCACCAGCCCCAGACACCGATGACTCCTGGAACTCCCAGCAGCCAGTTTGTGGACTCCATGCTAAGACTGCAGGGCCAGGTGCTTCAAGCTTGGAGGCCCCTGAGACAGTCCTTCACATCCTGTGACAGGAGCAGGACCGGCTACATCCCCCTGCAGGACTTCAAAAAGGTAATGACACCCCGAGAAATTCACTACAAGGGATCTGTTTGA

Function

GO: NA

KEGG:

id description
K23851 EFCAB6; EF-hand calcium-binding domain-containing protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49788 lncRNA upstream 1567 8536233 ~ 8569891 (+) False AMCG00012803
TU49733 lncRNA upstream 229405 8335898 ~ 8342053 (+) True AMCG00012797
TU49699 lncRNA upstream 302237 8268994 ~ 8269221 (+) True G39838
TU49633 lncRNA upstream 438894 8057019 ~ 8132564 (+) True G39776
TU49569 lncRNA upstream 662292 7906257 ~ 7909166 (+) True G39737
TU49822 lncRNA downstream 59377 8666754 ~ 8667464 (+) True G39951
TU49901 lncRNA downstream 443710 9051087 ~ 9053819 (+) True G40022
TU49921 lncRNA downstream 476697 9084074 ~ 9085689 (+) False AMCG00012818
TU49926 lncRNA downstream 483937 9091314 ~ 9093846 (+) True G40041
TU50015 lncRNA downstream 657501 9264878 ~ 9265093 (+) True G40119
AMCG00012803 mRNA upstream 1567 8555090 ~ 8569891 (+) True AMCG00012803
AMCG00012798 mRNA upstream 127816 8442404 ~ 8443642 (+) True AMCG00012798
AMCG00012797 mRNA upstream 225603 8338155 ~ 8345855 (+) False AMCG00012797
AMCG00012785 mRNA upstream 494311 8041802 ~ 8077147 (+) True AMCG00012785
AMCG00012786 mRNA upstream 537059 8034094 ~ 8034399 (+) True AMCG00012786
AMCG00012811 mRNA downstream 187791 8795168 ~ 8799438 (+) True AMCG00012811
AMCG00012810 mRNA downstream 216120 8823497 ~ 8844351 (+) True AMCG00012810
AMCG00012815 mRNA downstream 246704 8854081 ~ 8872158 (+) True AMCG00012815
AMCG00012817 mRNA downstream 431945 9039322 ~ 9043541 (+) True AMCG00012817
AMCG00012816 mRNA downstream 456940 9064317 ~ 9077901 (+) True AMCG00012816
TU49527 other upstream 735244 7835346 ~ 7836214 (+) True G39709
TU49477 other upstream 843630 7725488 ~ 7727828 (+) True G39670
TU49223 other upstream 2053537 6517408 ~ 6517921 (+) False AMCG00012748
TU49057 other upstream 2748138 5807846 ~ 5823320 (+) False AMCG00012718
TU48986 other upstream 3018691 5552417 ~ 5552767 (+) True G39297
TU49939 other downstream 505083 9112460 ~ 9113101 (+) False AMCG00012820
TU50138 other downstream 1829530 10436907 ~ 10444447 (+) True G40224
TU50139 other downstream 1829530 10436907 ~ 10444447 (+) False G40224
TU50140 other downstream 1829530 10436907 ~ 10444447 (+) False G40224
TU50630 other downstream 3881198 12488575 ~ 12535929 (+) True G40629

Expression Profile