RNA id: AMCG00012813


Basic Information

Item Value
RNA id AMCG00012813
length 1944
RNA type mRNA
GC content 0.51
exon number 14
gene id AMCG00012813
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 8667317 ~ 8681599 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCGACGAGTGCTCTTTTGAGAGAACTTGTGACCATACATGCATCAACTACCCTGGCAGCTTTGAGTGCATCTGTCAGAAAGGCTTTACGCTGTATGGGCTCACACACTGCGGAGACATCGATGAATGCAGCATCAATAATGGCAGCTGTGAGCATGGCTGTGTCAACACCGTGGGGAGCTACGAGTGCCTATGTCCTCCTGGGAAGAAGCTCCACTGGAACAAGAAGGATTGTCTTGAGGCGGTGAAATGTCTCCCAAATGGAAAGCCAACCCCAAAGGCTCAGCTGATCTGTGCCAAGACTGGTGGTGTGGAGATGTGTTCCTTGTCCTGTCCGTCCAACGCTCTGTTTGTTGCAGATTCTGAAAACAGTTACACTTTAAGTTGTGGTGTTCCAGGACAGTCGGGCAAATCCCCACAGAAGAGAAACACCACGGCCGCCATACTGGGCTGCACAGatacATTAGCTCCACCTATTAAGCAAAAAGCCCGCTTTAAAATTAAGGATGCGAAATGTCACCTCAGGCCTCGCAACAAGGAGAAGTTCAGAGATAATCCGAAGCAGATTGCACAAGATGACTGCCATGTGACGTTTGTGAACCTAAAATGCGACTCGTCAAAGAAGAAGCGCCGAGGTCGAAAATCCCCCTCTAAAGAAGTGTCGCACATCACGGCTGAGTTTGAAGTGGagatgaaggaggaggaggtatCAGAGTCTTGCAATGTGGATTGTGTGCGCAAGAGGATGGAACAGAGGCTACAGACGGTGATCAAGACCCTGAGGAAGTCCATCAACAAGCAGCAATTCTACATCCAGTTTTCGGGAACCGACTATGAAGTTGCCCAGAAGCCGGCCAAGCTGCCAGAGAATCAGGActgcagtgcagggaCCTACTACAGTGGAGAGCAGGACCTGTGTGTCCAGTGTCCCCCGGGAACATACCAAGACACTGCCGGCCAGCTGTCCTGCGAGCCCTGCCCTAGCAATGAGggccaggccatcgctggggCCAGGAACGTTTCTGAGTGTGGAGGTCAGTGCCCCGCTGGTCATTTCTCTGCCGACGGTTTCCAGCCCTGCCAGTCCTGTGTCCTGGGCACCTACCAGCCCGAGCCGGGCCGCGTGCTCTGCTTCTCCTGCGGAGGAGGACTGATGACCAAGTATGAGGCCGCTGTCTCCTTCCAGGACTGTGAAACGAAAGTGCATTGTTCCCCTGGGCACTATTATAACTCCACCACGCACCGGTGTATCCGCTGTCCCGCTGGTACCTACCAGCCCGAGTTTGGTCAGAACTACTGCATAACCTGCCCTGGAAACACAACGACAGATTTTGATGGATCCACCAATGTTACGCATTGTAAAAATCAGGTGTGTGGAGGGGAGCTGGGTGACTACACCGGCTTCATCGAGTCGCCTAACTACCCTGGGGATTACCCCGCCAATGTGGACTGCATCTGGAATAtcaacccccccccaaagaGGCGCATTCTGATCGTGGTGCCCGAGATCTTCCTTCCCATCGAAGACGAGTGTGGAGATGTTCTGGTCATGAGGAAAAGTGCTTTACCTACCTCAATAACAACCTATGAGACGTGTCAGACATATGAGAGACCCATCGCCTTCACTTCAAGGTCCCGCAAGCTATGGATACAGTTTAAATCCAATGAGGGAAACAGTGGAAAGGGATTCCAAGTACCATACGTAACTTATGATGAGGATTACCAGCAGTTAATAGAAGATATTGTTCGTGATGGAAGACTGTATGCGTCTGAGAATCACCaagaaatattaaaaGACAAAAAACTGATCAAAGCACTTTTTGATGTATTGGCTCATCCTCAAAATTACTTCAAGTACACAGTGCAGGAGTCCAAGGAAATGTTTCCGAGGTCCTTCATTAAGCTGCTGCGGTCTAAAGTATCCAGATTTCTACGGCCCTATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49823 lncRNA downstream 293 8660448 ~ 8667024 (-) True G39952
TU49798 lncRNA downstream 97428 8568052 ~ 8569889 (-) True G39929
TU49700 lncRNA downstream 398096 8268994 ~ 8269221 (-) True G39839
TU49559 lncRNA downstream 771591 7891577 ~ 7895726 (-) False AMCG00012782
TU49523 lncRNA downstream 839170 7827278 ~ 7828147 (-) True G39707
TU49886 lncRNA upstream 218514 8900113 ~ 8901481 (-) True G40008
TU49922 lncRNA upstream 402061 9083660 ~ 9085793 (-) True G40039
TU50011 lncRNA upstream 555301 9236900 ~ 9257451 (-) True G40115
TU50084 lncRNA upstream 1005211 9686810 ~ 9690911 (-) True G40172
TU50119 lncRNA upstream 1544095 10225694 ~ 10225957 (-) True G40206
AMCG00012808 mRNA downstream 17277 8637937 ~ 8650040 (-) True AMCG00012808
AMCG00012809 mRNA downstream 51216 8612242 ~ 8616101 (-) True AMCG00012809
AMCG00012805 mRNA downstream 114228 8536168 ~ 8553089 (-) True AMCG00012805
AMCG00012806 mRNA downstream 134599 8499637 ~ 8532718 (-) True AMCG00012806
AMCG00012804 mRNA downstream 188138 8464160 ~ 8479179 (-) True AMCG00012804
AMCG00012814 mRNA upstream 56571 8738170 ~ 8747560 (-) True AMCG00012814
AMCG00012812 mRNA upstream 121283 8802882 ~ 8821156 (-) True AMCG00012812
AMCG00012821 mRNA upstream 164985 8846584 ~ 8849492 (-) True AMCG00012821
AMCG00012823 mRNA upstream 225243 8906842 ~ 8907663 (-) True AMCG00012823
AMCG00012827 mRNA upstream 233464 8915063 ~ 8967612 (-) True AMCG00012827
TU49217 other downstream 2211139 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 6483154 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 6890096 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 8127726 523747 ~ 539591 (-) True AMCG00012628
TU49940 other upstream 430842 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 3558797 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 4433294 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 9198626 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 9272464 17954063 ~ 18043587 (-) False AMCG00013042

Expression Profile