RNA id: AMCG00012819


Basic Information

Item Value
RNA id AMCG00012819
length 3904
RNA type mRNA
GC content 0.45
exon number 13
gene id AMCG00012819
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 9095412 ~ 9111776 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTACTGAACAGTTGTCATACAGGAAAGCACATGAACCGGATGTAATTTACAGCGATGGAAGGATTCAGTCCcctaaatgaagaaaacaaagaggATACCTGCTTCTGTTTCAGTCGGAGAGGCACCATCTCCCCCTTCCTGTGTTCGGCTCCAGATGATTTACTGCAGGAACAAAACTTCCTGAGGTCAGAGATCTTCCCTCAGATAGACACACTTTATCAGGCCAGGGGAGCCCGCTTTAAAGCTGTGGACCTTCAGTGGGACAGGGGAAATCTGGAGAATTGGTCACCTCATCACCCCAATCTTGAACTTGTCTCCTCCCAACAACTGAAAATCAACCTGGACTACATCAACAATTCCCCTTTTTTCATATGCTTGCTGGGCCACCGATATGGGGAGTTTCGGCCTGAGAACTCCATTCCTCTGCCTGGTTCTGTTGCTAGTTATGAAGGATTGTCCAAAGTGGAGAGAAATCTGTATGTTGCCAGCAAGAATGGCTATCCCTGGGTACTCAACAGCAGATACCAAACCTATAGCTTGACAGAGCTTGAGATCACCCAAGCAGCTTTCCTGAAGGACCCCCAAGGTTGTTTCTTCTATTTCCAAGATTACTGCTTTGAGGAGGAGAAGGCCGCCTATGATCAGAGGAAGACCTTTCTGAGTGTTTTGTCCAACCAGACACAATATGAACAACAGAGGATGAAGGAGCTGAAAACAAGGATCATTAATAACTGTTTGCCTGTCAGGTTTTTCAGAAATCTGCAGGAGCTGGGAGACTTAGTGATTAAAGACTGGAGAAGTGTGATTGAAAAGCTGTACCCTCAAGACACAGTTTCAGGATGCAGTGgcCTTAAACGGAGCCATGAACATGCATGTCACGAAGCCTGGGCAGAGACACTCTGTCGGCGGTTTGTTCCCTGGGATCAGTCTTGGCAGCTATTTCAAACACTTGACAAGTTTGCTTTTTCCACCACTTCTGTTGTCAAATCACACGATTTAGTTGTTCCTGAGAGAACTTCAGAAGTTGAAAGAACAAGCAAAAACCAGGAAGAAAAATCAATTCTGCTGCTGTGTGGAGCTCGGGGATGTGGCAAGTCTTCTTTAGTTGCGAGCTGGCTTCAGGATTTCACGAAGAAGAACCCCCGAGTTGTGGTTGTACCATTTTATGTTGGTGCCAGTTCCACCAGCACTGATGTCAGGTCCTTCCTGAGACACTGCACTTTATACCTCCGTTGTGCATACTATGCCCAGTGCAAGCTGATACTCACGACCACTGTGTCAGATCTTTCCTACAAATCCATAAGCTGTCGGCAAGATGCACATGTCCTTCGTTGCCCTAGCCAGCTGGATCAAGATGTTAGGGGTAGGATCTGCCTCAAACACTTGGCGATGCCCTATAAGGAGATTCCAAAGTCGCTGCAAGAAAGTAGCATGGCCAATAAGCAGAGCCTTTCCCCAAGTTTTCTGTCTCTTGTGGGAAGTGAGTTGCAAACCTGCAGGGTTGTGAGAGATGAAGAGGAACTTTTGGAGGAGTATGTGGAGGCGCATTCGATCCAGGAACTGTGGGCTCTGGTGATAAAACGTTGGACCCAGGACTACAGCTGGGGTGTTGAGGAGACAAGCACCAATAAAAGGACAGTGTCCCTTTCCTGCGAACCTCCAACAGggcagcaggggtgggtGTGGGATGTACTGTGTTTAATACGCCTGTCACGTTGTGGACTAAGAGAAGAGGAGATCCTGAGCTTACTGGAGACCCTGGGGTATTGTGGGAGCCTGAGGGTCTTACCCCTTGACTGGGCTGTGTTCCGCTCGGCCGCTGGGCACTGGATTCAGGAGAGGCCTGGCGGTCTTCTGTGCTTTACCCACCAGTCTCTTTGCCAGGCTGTGGACTTGCACCTGCTGACTTTCTCACAAGAAAACCCCATCGGTCCAAAGACTTTTAATAGCAATAAGATGGCTTTTCATAGGATTCTAGCCCAGTTCTTCCAACAGCAGCAACGGACGCCCTGTAAGAGAGTGTTTTTGGAGCTGCCCTGGCACCTGGAACAGAGCCAGTCCTGGGGAGACCTGTACACCTTCCTTTCTGATCATGGGAGCATTGACTTCTTCTGCAGGAACTCTAAACAGTTTCCCCAGCTGAAGACAGACTTGCATAGGTACTGGAGGCTGCTGGCCAAAAAAGGCTACGATCCCCTCGTCTCCTTTCAGAGCTTGTTGGGCCAAAAAACTGAAGACTGCACCAGTGAATCTGAAGGAAGGAAGagcacaattacatttatagCAAATATGTTACTCCCACAGATCCAGGTCCAAGCAAGGCTGATAGCTTTCTCTGCTGAAGTTTTGAATGACATTGGAAAGACTCTGGGATATGAGCTGTTACTGCAGAAGGCCGAGAAACTTCTTGTAGAGGCTAATGTGAAAGACCAAACAAGTATGGACATCTTACTGAATGTGGAACAAAGCCTTGCAGAGTTGTACATTAGAATGGGTCAACGACAAGAGGCTGAGATATACTGTTGCAAAGCCCTGAACACCGCAAATGCCTTACTGACATGCTACCCTGAAAAAAGTGATGTCACTCAAAAAACTAGAGGCCACGTGCTGTGTAAATTGTGTCAGCTACTCATTGGAAGTGGATCCCCGGATGTCCCAGTCATGCTGAAGGAGGTCTGTGATCTTAATGAAAGTGCTCCCCACCCCTGCACTGAAGCCACAGTGAAATTCCTGCAGGGAATCAACAAGAGTGACAGACGACAAGCACTGGAACTCTACCAGCATGTGGTCAGagttaaagaaagagagaaggccTACACATTATCCCCGCAGCTGGATCGCACACTGGGATGCAGCCTAGCGTTTACACTTTGCAAATTAGGAAAACTACTATTAATGAACTCAAGTCCACAGGAGAAACGGGAAGCGATCACACTTTTACAAAAAGCTATGGATTTACGAGTCAGCTTCCTTGGCCCTGAACACAGACTAACCAGAGAAATACTGTGgattttaaaaaacaagactgaAGACACTGCTGATCCATGCAATACAACGTACATCTCACAAAGGAACGAAACTTACTACCATACAGGAAAGCGATACCTACAGATCTCTAGACCACAGTCTCATAcagtcctgagagagagacccAAAACTGCTTTTGAGTTGAGATCTGTtcctagcagcagcagtaggaCCATCATGAACACACATTCTCAGAACTGCTCAGCCTACAAGCCTTGGACCAAATGCCAAACCTCCATATTTGGGCCTTATAGCAACATCTGTGATTTGATTCCCGTGTTTAAGCTTGACAAACAAAGAGTATTCCACAAATCAGCTTGGTACCATGTGCCAGGGAGGTATCCAAATCTTCAACAGTCAATTCCCCCTAAAAGGCATCAGGTGCGGAGGATAAGTGAGAAAACATGACCAAACAACTGTACAAATCTATACTGTAAGGGAATCCCTTTTCACATGACTTGAATGCTTTAGATTATGTGGGAATGATTATGTAAATTTAGGGActatttacaatttatttaaaattgtagcTTTAACTTCTACCTTTGatcttatttaataattatattaccCTACCCACAAGGTGTCActgaaagataaaaacattaaacataaaatgtatttacacataCCTTTATGAGATGTGAATATATTGTAAACCTGTATACACTTTTGAAACAAGGAATCACTTGTGATTCCAAAGGCTCTCGAAGTGTATAACTTCAAACTGCTCCCAATCTTCTATGCACAGATGTCAGATGTAGAATTTAAcgtatttttaattgttgggtttatattttgtacgtttaattttattcttattcataAATGTCTGAATCTGACCGTTATTATGTGTTTGTAAAAAGTAAGTGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49926 lncRNA upstream 1566 9091314 ~ 9093846 (+) True G40041
TU49921 lncRNA upstream 9723 9084074 ~ 9085689 (+) False AMCG00012818
TU49901 lncRNA upstream 41593 9051087 ~ 9053819 (+) True G40022
TU49822 lncRNA upstream 427948 8666754 ~ 8667464 (+) True G39951
TU49788 lncRNA upstream 525521 8536233 ~ 8569891 (+) False AMCG00012803
TU50015 lncRNA downstream 153102 9264878 ~ 9265093 (+) True G40119
TU50017 lncRNA downstream 182555 9294331 ~ 9294642 (+) True G40121
TU50049 lncRNA downstream 361769 9473545 ~ 9473868 (+) True G40145
TU50050 lncRNA downstream 362197 9473973 ~ 9474220 (+) True G40146
TU50116 lncRNA downstream 1060478 10172254 ~ 10172463 (+) True G40203
AMCG00012818 mRNA upstream 9712 9083662 ~ 9085700 (+) True AMCG00012818
AMCG00012816 mRNA upstream 17511 9064317 ~ 9077901 (+) True AMCG00012816
AMCG00012817 mRNA upstream 51871 9039322 ~ 9043541 (+) True AMCG00012817
AMCG00012815 mRNA upstream 223254 8854081 ~ 8872158 (+) True AMCG00012815
AMCG00012810 mRNA upstream 251061 8823497 ~ 8844351 (+) True AMCG00012810
AMCG00012820 mRNA downstream 830 9112606 ~ 9130211 (+) True AMCG00012820
AMCG00012828 mRNA downstream 139418 9251194 ~ 9254555 (+) True AMCG00012828
AMCG00012832 mRNA downstream 263391 9375167 ~ 9382501 (+) True AMCG00012832
AMCG00012833 mRNA downstream 300550 9412326 ~ 9469248 (+) True AMCG00012833
AMCG00012834 mRNA downstream 522458 9634234 ~ 9691339 (+) True AMCG00012834
TU49527 other upstream 1259198 7835346 ~ 7836214 (+) True G39709
TU49477 other upstream 1367584 7725488 ~ 7727828 (+) True G39670
TU49223 other upstream 2577491 6517408 ~ 6517921 (+) False AMCG00012748
TU49057 other upstream 3272092 5807846 ~ 5823320 (+) False AMCG00012718
TU48986 other upstream 3542645 5552417 ~ 5552767 (+) True G39297
TU49939 other downstream 684 9112460 ~ 9113101 (+) False AMCG00012820
TU50138 other downstream 1325131 10436907 ~ 10444447 (+) True G40224
TU50139 other downstream 1325131 10436907 ~ 10444447 (+) False G40224
TU50140 other downstream 1325131 10436907 ~ 10444447 (+) False G40224
TU50630 other downstream 3376799 12488575 ~ 12535929 (+) True G40629

Expression Profile