RNA id: AMCG00012820


Basic Information

Item Value
RNA id AMCG00012820
length 1650
RNA type mRNA
GC content 0.51
exon number 14
gene id AMCG00012820
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 9112460 ~ 9130211 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGTCCATGGCTTTGTCCCTTTTGAGTAGCCTGAGAAACGGAGACAGTTTGAAGAAATTACTAAACGGTTGCAAGGGTTTACACAGCGGCGGGGGAAGACGGGATTTTCGCAGCCGGGCTTCGGGGCCGAAAGGGAGGCAGTCGGGGCTACAATGGCTCGGTACCACCGGAGTGGCAAGGGGAGCCGAGCAGGTCTTGTCCCACCGTAGCCCCCCAAACAGGACTGCTCCTCTGTGTACCAGTGCAGGCAGCGGGCAGGACATGACCAGCTCGCTTTGGGCACTTTATAACGAGAccaaaaaacagacagaagAACTGGGACTCAGCAGAGCAGTTGGCAGTGCTGCTGACCTAtACCCTGAGGGTCTTCGGGAATATGACTATATATCTGATTTTGTCATCCGGGGTCTTCATTATGATGTACAAAAGGCTTTGCTGATGAAGATTGATGCCTTCCACTATATTCAGCTAGGAACTGTATACAGTAACGTGACATCCCTGATATTACTTTTCAGGGGCCTGCATCCAGTGTCGGAAAAGGAGGTCATCGCAATGTATGAAGGCTCTCATGTGCCTTTGGAGCAGATGAGTGACTTCTATGGCAAGAGTTCCCATGGCCACACCATGAAACAGTTCATGGATATCTTCTCTCTGCCTGAGATGACCCTGCTCTCCTGTGTCAATGATTACTTCATGAAGCACAATATTGACTATGAGCCAGTCCACCTCTACAAAGATGTCAAGGAGGCTATAGGAGACGTCCATGTGAGGGGAATAATGTACAGAGCCGTGGAAGCAGATATTgGAAAGTATATCCGATATGGTGAACAGACCCATGCAGTGCTGAGGAAGCTCTCAGAAAATGGAAAGAAGATGTTTCTAATAACAAACAGCCCGTTTGACTTTGTGAGCCGAGGTATGAACTACATTGTTGGGAAGGACTGGAGAGACCTCTTTGATGTTGTTATTGTGCAAGCAGACAAGCCTGGCTTTTTCAATGATCGGAGGAAgCCATTTCGGAGAGTGACAGACAAAGGGGTTCTGCTGTGGGACAGGATTCACAAACTGGAGAAAGGACAGATTTACAAACAGGGCAATCTCTATGAGTTTCTGAGGCTGACGGGCTGGAGAGGCTCCAAGGTGCTGTATTTTGGAGATCACATCTACAGTGACCTAGCGGACCTGACTCTCAAGCACGGTTGGAGGACAGGGGCCATCATCCCAGAACTGCGGCAGGAAATCAAGATCATGAACACAGAAGAGTATGTGCACACCACAACCTGGCTGCAGGGACTGACAAGCCTTGTGGAAAACATGCAAgtACACAGAGACCCAGCATCACAAATGGTTTTGCAAGAGTGGAtcaaagagagagaagcaatgagGTCAAGGACGAAGGACATTTTCAACCCTCAGTTTGGAAGCCTTTTCAGGACCTACCACAACCCTACCTACTTCTCCCGCCGTCTGTCCCGGTTTGCAGACATCTACATGGCTTCTCTCAGCTGCCTTCTGAACTACGACCTGCACCACACCTTCTTCCCCCGCCGTACTCCCCTGCAGCACGAGGCCCCCATGTGGCCCGACCAGGTGTGCTCCGGCGCACTGAAACTGCCCTTCCTGGCAGAGGCGGCTCAGGTCAAGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49926 lncRNA upstream 18760 9091314 ~ 9093846 (+) True G40041
TU49921 lncRNA upstream 26917 9084074 ~ 9085689 (+) False AMCG00012818
TU49901 lncRNA upstream 58787 9051087 ~ 9053819 (+) True G40022
TU49822 lncRNA upstream 445142 8666754 ~ 8667464 (+) True G39951
TU49788 lncRNA upstream 542715 8536233 ~ 8569891 (+) False AMCG00012803
TU50015 lncRNA downstream 134667 9264878 ~ 9265093 (+) True G40119
TU50017 lncRNA downstream 164120 9294331 ~ 9294642 (+) True G40121
TU50049 lncRNA downstream 343334 9473545 ~ 9473868 (+) True G40145
TU50050 lncRNA downstream 343762 9473973 ~ 9474220 (+) True G40146
TU50116 lncRNA downstream 1042043 10172254 ~ 10172463 (+) True G40203
AMCG00012819 mRNA upstream 830 9095412 ~ 9111776 (+) True AMCG00012819
AMCG00012818 mRNA upstream 26906 9083662 ~ 9085700 (+) True AMCG00012818
AMCG00012816 mRNA upstream 34705 9064317 ~ 9077901 (+) True AMCG00012816
AMCG00012817 mRNA upstream 69065 9039322 ~ 9043541 (+) True AMCG00012817
AMCG00012815 mRNA upstream 240448 8854081 ~ 8872158 (+) True AMCG00012815
AMCG00012828 mRNA downstream 120983 9251194 ~ 9254555 (+) True AMCG00012828
AMCG00012832 mRNA downstream 244956 9375167 ~ 9382501 (+) True AMCG00012832
AMCG00012833 mRNA downstream 282115 9412326 ~ 9469248 (+) True AMCG00012833
AMCG00012834 mRNA downstream 504023 9634234 ~ 9691339 (+) True AMCG00012834
AMCG00012835 mRNA downstream 572059 9702270 ~ 9723930 (+) True AMCG00012835
TU49527 other upstream 1276392 7835346 ~ 7836214 (+) True G39709
TU49477 other upstream 1384778 7725488 ~ 7727828 (+) True G39670
TU49223 other upstream 2594685 6517408 ~ 6517921 (+) False AMCG00012748
TU49057 other upstream 3289286 5807846 ~ 5823320 (+) False AMCG00012718
TU48986 other upstream 3559839 5552417 ~ 5552767 (+) True G39297
TU50138 other downstream 1306696 10436907 ~ 10444447 (+) True G40224
TU50139 other downstream 1306696 10436907 ~ 10444447 (+) False G40224
TU50140 other downstream 1306696 10436907 ~ 10444447 (+) False G40224
TU50630 other downstream 3358364 12488575 ~ 12535929 (+) True G40629
TU50637 other downstream 3359588 12489799 ~ 12490422 (+) False AMCG00012894

Expression Profile