RNA id: AMCG00012822


Basic Information

Item Value
RNA id AMCG00012822
length 4721
RNA type mRNA
GC content 0.46
exon number 17
gene id AMCG00012822
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 9051577 ~ 9062325 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGCCCCCTATCCCCGGCGGAGTGGGTTAACAACGGGACTATGGCTTCACAGAGTCCGCTGTGGAAGAAGGTGCAATCCTTCAGCGGTCCGGTGCCCCGGTCACGACACGGCCACCGAGCCGCCGCTATCCGGGAGCTGCTCATCGTCTTCGGCGGAGGGAATGAGGGCATCGCCGAGGAGCTGCACGTTTATAACACCGTGTCAAAACAGTGGTTCCTGCCCGCAGTGCGAGGAGACATCCCTCCCGGCTGTGCTGCCCATGGCTTCGCCTGTGAGGGCACCCGCATCCTGGTGTTTGGAGGCATGGTGGAGTATGGGAAATACAGCAATAGTCTCTATGAATTGCAGGCCAGCAGGTGGCTTTGGAAGAAGCTGAAACCTCGACCGCCCAGGAACGCCATGCCCCCATGCCCTCGCCTCGGGCACAGCTTCACACTGTACGGCAACAAGTGTTATCTGTTCGGAGGCTTAGCGAATGACAGTGAGGATCCCAACAGCAATGTCCCACGGTACCTCAATGACTTCTTTGAGCTGGAGCTGCAAGCGGTGTCGGGGGTGAAAGGCTGGAACATTCCAGAGACAAAGGGCACGGTCCCGTCAGCCCGGGAGTCTCACACTGCTGTGGTCTATAGCGCCAAGGGCAGCTCTCCAAAGCTTTATATTTTTGGGGGAATGCGAGGCTGTAGGCTGGGAGACCTCTGGCAGCTGGACTTAGAAACGATGACCTGGTCAATGCCTGAAACCAAAGGGCTGTCACCCGTTCCCAGAAGTCTGCATTCAGCCAATGTCATTGGAAGCAAGATGTACGTGTTTGGAGGCTGGGTTCCAGCTCGGAAAAGTGAAGACTTATCGAATGTGTTGGGTACAGAATGGACTTGTACCAACTCCTTGTCGGTGCTGAACATCGATACCATGACCTGGAAGTGTCTGGTGTCGGAGAGacaggaggaggggaaggggagcGGCCCGAGGCCCCGAGCTGGTCACTGTGGGGCCACCATCGGCTCCCGACTCTACATCTGGAGCGGAAGGGATGGCTACAGAAAGGCCTGGAACTACCAGGTGTGCTGCAAGGACCTGTGGTACCTAGAGACAGAGAAGCCTTCCACGACGTCAGCAGTGCTCCTGGTGAAAGCCACCATCAACATGCTCCATGTGGCCTGGCGTCCCCTCCCTGCGGCCGAGTCCTACCTGCTCCAGCTGCAGCCTGTCTCTGCCGGGCAGACTCCCGTTCCCCCCAGCCCCTCTGCCCCCGACCCACAGCCGTCCACGGGGCGGCCCAGTGCGGAGCAGCAAAAAGGGGGTGCCACCGCCTCCCTGCTGGGCCTATCAGCTGACACAGGTTCCACCCAGTCGCAGTCTACTCAGGACAAGGGAAGCTGCCTTCTCGCTGACAAGTCACTGGGAGGAAAGTCACCTGTAACACAAATGGAGACCACTGCATCTGAAACTGTTGTCCAAGAGAGTGCTGAGTTTGAAATGCCAGGTGGTGAAGACAGTGAGGCCTCTCAAACTCGCACTGTGGACCAGAAGCAAAGGACAGACGTTGCTCTCTTGTCCGCAGTGCCACTCGCTCTGGAAGATATCCTGGGCCACAGTGTGCCCAGCCTGACCCCAGAAGATGACTTGGTGAAACGCGAGCCTATGGAGAATGAAGTGTGTGACATTCCAGCTAATCAACAAACTCCATCTCTACCTCAAAACTCACAAGGGCAAGCCGATTTTACAGCAGCCAGTGCCCCAGCTACCTCAGTACCTTCTACTaatagcaacacacacacaGAACCTCCAGATGAAAAAGATGACACTTTCCGATGGTATGATGTTGGCATCTTTAAGACCCTCTTCTCAGAGGTAACGCACTATTATCTTCCAGCAGGAGGAAAAACAGTGATGGTTAAATCGTCTGATTCGTTAGACTACGAAGACCGGAAGCAGCAGGCCTTGACCCCTGGAGCCACCTACAGGTTCAGAGTGGCAGGGCTGAACAGCTGTGGCCAGGGAGACTTCAGTCCGGTCAGCGAATACAAGACTTGCCAGCCTGGCTTCCCGGGGGCTCCATCTTCAGTCAAGATCACCAAAGCTGCTGATTCTGTCCACATCACCTGGGAGCCACCCACATCCCCATCGGGCCGGATCCTGGAGTACTCCATGTACCTGGCCGTGCGCAAGTCCCGTTCCAGCAGCACCGACAGTGACGGCAGCACCAGCCCCCTGGCCTTCATCAGGATCTACAGGGGCACCAAGACCTTCTGCACCGTGTCCTCCACCCACCTGAGCAACGCCCACATCGACTGCACCTCCCGGCCGGCCGTCGTCTTCCGCATTGCTGCAAAAAATGAGCAGGGCTACGGCCCGGCCACTCAGATCCGGTGGCTGCAAGATACATATAAATCGAAAGCATTGCAGCCTCATCCACTAGCTGAGGGAGCTGGGAAACCTGGACTGCAAATGCCAGACAGcACGAGTTTGGAGAAGATTAACACCGAGACGTGAAGTCCCCAGAAACTGTCTTGAGAATATTTTAAGAGAGCCACTTACATGCTGTAAAACAATTCGGATagttttttacttatttttttatatttgtttttgtacatatatacatatattttttaccagTTTTGAACCAGTGTTGCAGTTAATAATgtaaaccactttttttttttttaatatatatatttttgggggtTTGGTTAATATTTGCGTTCAAGTGTATGTAACTTTAGCTGGGCTGTATCGATACAGATTAAATCCCCTACCTAACATCTACTCCCCACCTAAGGGTAGATGCACCCAGTGAACATATGAAATTGGACACCTTCTGATGAGATTGGTTGGATTAAATATACAGTTGGACATTCATGATGTAGATCTCAAAGAAGGGTACCACTAAGATCATGAATCTTACCTGAAAAGTGTTTGTAGTctgtaatgtatgtgtgtgtagttcTGTGATTACAAAGTGTGATATTTAAAAGGTTAATTTTGCTGCATGTGCATTGTAATCATGTGTGAGTGCAATATGTCTCAAATTCTGACCTTTCTTTCTGTCGCAGCAAGTAGGACAGTCCTAGTCAACCTCTAGTGTTATGTATgcattgtgtctgttttgaaatgaaaatgacttgGATTATTGTGATTGGCATTAGAGCACTTTAAACTCGGCATTGTAGTACTGAATGTTAGTTTGAATGAGGGGAGGATTTCAGTGGAGGCTGCATCATGAAAGCTAAATAGGTCTTGCAGAGAAtcagattttcagttttaaatgtatagcaggatagtatttcttattttttaagcatAGCAATGCACGTTAGTTTAATGGATTAGAGACTTTAAAGGTGTACTAGAACATCAGAAACTGTATCGGTACAGCCTATATTGTGTCTTGGCTACTACAAGAAGGCTGATGCTGGGCTTGGAAAAcaggttaatttaaaaatcGACTACAGTTTAGAATTGATGTTGCAGTGAGCTGTGGGGATGGGGAATTGATGCTTCAGGCATCTGAAATAATTTCTTATCCCCTTCAAATTTAAGTTAAAGAGTGGTGTGTCATATGGAATACTGGTTTGCTTATCgttaatttacatttcataactATAGATCTACAAGATTTATAGGGAATTGGAGTAACCTGACTTTCTGGTTTGATAAATAATGAGAATTGAGAATTTTCTGTCTAAAGATACTGTATTGGCATATGGCTTTTAGAGcgaaaaaaacgaaaaacagacaaattaaaacagtttagTGGTTCAAACAATCTACCGCTTTTTACATGTATATGGGAGAAAGCAAACTGCAAATATGATTGTTATTCCTAGGATTAGTCACAGCAAATGTATGTTATTAGTGATGTTCCTTTTAGAAAGGAGGGTATAAAAATATAGTTTGTGTAAAAAATGCAACTATCTTAATGCAAGTATGTTACACTTACTAGCACAGACCGTAAACATGTAgcctaatgtttatttgttgCCAATTTCACTGGGTGTCTTTGAAGTTACTTAAATGTTTTCTactttcattaataaaaatggtgCTCAAGGCTTTTAATCAGTCTGAATAATGTAAAGTAGAAAGTTGATACTTCTGACATTACCTACCTTTTGCCTTTTAAAGTGGATGCATTTTCAgtcaatttaatgtattactacAGGTGCTGCAAGACATTATCCTGATATTTCACTGCAATGTCTGAAATCCTTTTATTTGCTACAGTGGGTAAAACCCACGCtttatttaaatggtatttGTATACAAACTGAAACTGATCAAATGGGGGAAATAGTGTCAATTTTAGTATCTGTGAAATCATCGAAGGAAATTTGAACTTGTGCTTTGCAGATCTACATTAGTGAAAGTAGAACACAAATATTACACCGTATATAAACTGGAGGTTGGTGCATTAAATTACttctaatttaatattatattggtATATTCTATGATATTGAATTTCACAATTTTCAAAAATGTCccatgttcacattttcttgtaaGAGGAATAATCTGTAAATGTTGATCATGACAACAGTAAATCCAATTATTTAAATCCAACATGCTGCATTTTTTCTCTGATCTTGTGTAGCTTGGTGACTCGCATTTCTAAATTTCTGGAACATTTCTTGACTTCATATTTGATCTATAATTACTATATGGACTTCTATAGGAAGAAACTAAGGAAAACATACATAGGGATTATGTAT

Function

GO: NA

KEGG:

id description
K14966 HCFC; host cell factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49886 lncRNA downstream 150096 8900113 ~ 8901481 (-) True G40008
TU49823 lncRNA downstream 384553 8660448 ~ 8667024 (-) True G39952
TU49798 lncRNA downstream 481688 8568052 ~ 8569889 (-) True G39929
TU49700 lncRNA downstream 782356 8268994 ~ 8269221 (-) True G39839
TU49559 lncRNA downstream 1155851 7891577 ~ 7895726 (-) False AMCG00012782
TU49922 lncRNA upstream 21335 9083660 ~ 9085793 (-) True G40039
TU50011 lncRNA upstream 174575 9236900 ~ 9257451 (-) True G40115
TU50084 lncRNA upstream 624485 9686810 ~ 9690911 (-) True G40172
TU50119 lncRNA upstream 1163369 10225694 ~ 10225957 (-) True G40206
TU50194 lncRNA upstream 1487332 10549657 ~ 10551377 (-) True G40266
AMCG00012825 mRNA downstream 20227 9013361 ~ 9031350 (-) True AMCG00012825
AMCG00012827 mRNA downstream 83965 8915063 ~ 8967612 (-) True AMCG00012827
AMCG00012823 mRNA downstream 143914 8906842 ~ 8907663 (-) True AMCG00012823
AMCG00012821 mRNA downstream 202085 8846584 ~ 8849492 (-) True AMCG00012821
AMCG00012812 mRNA downstream 230421 8802882 ~ 8821156 (-) True AMCG00012812
AMCG00012824 mRNA upstream 15563 9077888 ~ 9083331 (-) True AMCG00012824
AMCG00012826 mRNA upstream 24693 9087018 ~ 9093930 (-) True AMCG00012826
AMCG00012829 mRNA upstream 50674 9112999 ~ 9152405 (-) True AMCG00012829
AMCG00012830 mRNA upstream 90231 9152556 ~ 9170975 (-) True AMCG00012830
AMCG00012831 mRNA upstream 108941 9171266 ~ 9250923 (-) True AMCG00012831
TU49217 other downstream 2595399 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 6867414 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 7274356 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 8511986 523747 ~ 539591 (-) True AMCG00012628
TU49940 other upstream 50116 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 3178071 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 4052568 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 8817900 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 8891738 17954063 ~ 18043587 (-) False AMCG00013042

Expression Profile