RNA id: AMCG00012824


Basic Information

Item Value
RNA id AMCG00012824
length 1972
RNA type mRNA
GC content 0.46
exon number 10
gene id AMCG00012824
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 9077888 ~ 9083331 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGCAGTCGATCGCTTGCTTCTTTGGGGGTTTTAATCTTAAATACGGTGTCctttttcatgaataaaaccaGTTCCCGGCGTAATTTGTAACAGGTATGTCACTGCTTTACACGATGTGTAGTTGCATGGGCGAAAAGCGCTTATTACCGCAAATGATCAAATATCTTCCCCTTTTCAGCGTAGGCCCCTGTGAACTCGTTGTgtcatattgttgttgttgttgttttaaattctcGACTGAGTTTTAACAATTGTGGGAAATGTAAGATGTGTAAATGGTAAATATTGTAACTGCAGTGTTTGTGAGCCCCGGAGCCCCGTTAGAGCGATTAAAAGACCAGGTTTCATTTGTGTCGGTCTGAACAAAAGGGGGGGGAAATTGACTGAGTATTTGAAATCACagttattattaatctatttaagTAAATCCACCATAACGATGGAAGAAAAGCAGTATGCATCTTTGACGGTCCCTACGGATTATCTGCAACATTGGTTCCAGTCAACTCAGCAGATCCAAGCCCTCCAGGCCACTCAGTATCACCAGATGTCGAACGTGTCTCCCTTCCTCGATGGATCTAAAGAGGAGTCGGAGATGACTGAGTTGTCTGTCCATCAGGAGCCTGCTCCTGCTCCAGTTCCAGTTCAAGCACCTACAAAGGGGAAGAGAGGTAGACCCCCAGGTAAAGACCCAAAGAAACCTGGAGCCAAGAAGGGCAAAGCAGCTGAGGGTTCTGCCGGGGGCAAGCAGGAGAAGATCTCGGATGCCTTCAAGAAGGTCAAGAGGAAAGTGGATCGCTTCAATGGAGTTTCTGAGGCGGAGCTCATGACTAAAACACTGCCGGACATCCTCACCTTCAATTTGGACATTGTGATTgtTGGAATTAACCCTGGATTGATGGCAGCTTACAAAGGACATCATTACCCTGGCCCAGGAAACCATTTTTGGAAGTGCCTTTTCCTGTCTGGTTTGAGTGATGCCCAGTTAAATCACCTGGATGACCTGTTATTGCCCGAAAAGTATGGCATAGGATTCACAAACATGGTGGAAAGGACAACCCCAGGAAGCAAAGACCTATCAAGCAAAGAGTTTCGTGAAGGAGGCAGAATTCTAGTAGAGAAACTGAAGAAGTACAAACCGCTAGTTGCTGCGTTCAATGGGAAATgtatttatgaaatatttagCAAAGAGATCTTTGGGTTCAAGATCAAGAAATTTGAGTTTGGAGTACAGCCACACAAGATCCCAGAAACCGACACAGTGTGCTATGTGATGCCCTCCTCCAGCGCACGCTGCGCACAGTTCCCCCGCGCCCAGGACAAAGTGCATTACTACATCAAGCTGAAGGAGCTGAGAGACCAGATCAAGGGCATAGGGACTACTGTAGGAGATGTACAAGAGACAGACTACAAGTTTGACTTGCAGCTGGCCAAAGAGGATGCAAAGAAGATGGCTATTAAGGAGGAGCAGTACGACCCAGGTTACGAGGCTGCTTTCGGAGGGGCTTACGGGGAAGCGGGACCAGAGGACAATGGCCACTGTAACTTTACACCCGCTGAACCAGAAGCCGCTAGTAAGGATGGTGCCCCAGCCCTGGCGCCCGGGCAGGTCCCAGAAGGACAGTGGATGATGCAGTCGTTTGCAGACCAGATTCCAGACATCGGTGGCTGTAGcacacaaccaccaccacaGCAGGGAGGAGAGACTGTCTGAGATGGAGCAGCTTTCCAGGAACTGCATGAGCACTGCAGTTTTAATGCAGTCACCAAGATACAGAACCTCAGTTCTCCAACTGAAGACTCGTTGTGCTgggtttttatatatatatatatagatgtatatataatacacctATTAGGTATTTCATATTGCATAAACTGGAGACCTCCTTAGTGAACTGTTCCACAATTAATTTTAAGTAGATTAGTTCATCCTGTGGAAACTactatttaaaactttttttttttttt

Function

GO: NA

KEGG:

id description
K20813 TDG; thymine-DNA glycosylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49886 lncRNA downstream 176407 8900113 ~ 8901481 (-) True G40008
TU49823 lncRNA downstream 410864 8660448 ~ 8667024 (-) True G39952
TU49798 lncRNA downstream 507999 8568052 ~ 8569889 (-) True G39929
TU49700 lncRNA downstream 808667 8268994 ~ 8269221 (-) True G39839
TU49559 lncRNA downstream 1182162 7891577 ~ 7895726 (-) False AMCG00012782
TU49922 lncRNA upstream 329 9083660 ~ 9085793 (-) True G40039
TU50011 lncRNA upstream 153569 9236900 ~ 9257451 (-) True G40115
TU50084 lncRNA upstream 603479 9686810 ~ 9690911 (-) True G40172
TU50119 lncRNA upstream 1142363 10225694 ~ 10225957 (-) True G40206
TU50194 lncRNA upstream 1466326 10549657 ~ 10551377 (-) True G40266
AMCG00012822 mRNA downstream 15563 9051577 ~ 9062325 (-) True AMCG00012822
AMCG00012825 mRNA downstream 46538 9013361 ~ 9031350 (-) True AMCG00012825
AMCG00012827 mRNA downstream 110276 8915063 ~ 8967612 (-) True AMCG00012827
AMCG00012823 mRNA downstream 170225 8906842 ~ 8907663 (-) True AMCG00012823
AMCG00012821 mRNA downstream 228396 8846584 ~ 8849492 (-) True AMCG00012821
AMCG00012826 mRNA upstream 3687 9087018 ~ 9093930 (-) True AMCG00012826
AMCG00012829 mRNA upstream 29668 9112999 ~ 9152405 (-) True AMCG00012829
AMCG00012830 mRNA upstream 69225 9152556 ~ 9170975 (-) True AMCG00012830
AMCG00012831 mRNA upstream 87935 9171266 ~ 9250923 (-) True AMCG00012831
AMCG00012837 mRNA upstream 797505 9880836 ~ 9882770 (-) True AMCG00012837
TU49217 other downstream 2621710 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 6893725 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 7300667 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 8538297 523747 ~ 539591 (-) True AMCG00012628
TU49940 other upstream 29110 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 3157065 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 4031562 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 8796894 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 8870732 17954063 ~ 18043587 (-) False AMCG00013042

Expression Profile